New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4525558 =	28 (0.700)	3 (0.080)	3/330	NT	8.8%	coding (489/1125 nt)	mnmA	tRNA‑specific 2‑thiouridylase MnmA
	?	AE015451	4525653 =	35 (0.890)					coding (584/1125 nt)	mnmA	tRNA‑specific 2‑thiouridylase MnmA

TACATCAGGCCATGGTGGCGGCCGATCACTTCACCTTCGGTGGTTTCGATGTCGCCCGGCTGGGCCGGCAGGTACTGCTTGAGGAAGTCGCTGAAGCGGCGCTCGCCAATGAAGCAGATGCCGGTGGAATCTTTCTTCTTGGCGGTGGCCAGGCCGTGTTTTTCGGCGATGGCGCGTACTTCGGGCTTTTCCAGTTCGCCGACCGGGAACAGTGTGCGGGCGATTTCCTGGCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4525794‑4525558 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgCCAAGAAGAAAGATTCCACCGGCATCTGCTTCATTGGCGAGCGCCGCTTCAGCGACTTCCTCAAGCAGTACCTGCCGGCCCAGCCGGGCGACATCGAAACCACCGAAGGTGAAGTGATCGGCCGCCACCATGGCCTGATGTACCACACCATCGGCCAGCGCCAGGGCCTGGGCATTGGCGGCCTGAAGGATGCCAGTGACGAGCCGTGGTACG  >  AE015451/4525653‑4525865                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TACATCAGGCCATGGTGGCGGCCGATCACTTCACCTTCGGTGGTTTCGATGTCGCCCGGCTGGGCCGGCAGGTACTGCTTGAGGAAGTCGCTGAAGCGGCGCTCGCCAATGAAGCAGATGCCGGTGGAATCTTTCTTCTTGGCGGTGGCCAGGCCGTGTTTTTCGGCGATGGCGCGTACTTCGGGCTTTTCCAGTTCGCCGACCGGGAACAGTGTGCGGGCGATTTCCTGGCCGC                                                                                                                                                                                                                         >  1:442020/1‑235                                                                   GGCAGGTACTGCTTGAGGAAGTCGCTGAAGCGGCGCTCGCCAATGAAGCAGATGCCGGTGGAATCTTTCTTCTTGGCGGTGGCCAGGCCGTGTTTTTCGGCGATGGCGCGTACTTCGGGCTTTTCCAGTTCGCCGACCGGGAACAGTGTGCGGGCGATTTCCTGGCCGCCGCCAAGAAGAAAGATTCCACCGGCATCTGCTACATTGGCGAGCGCCGCTTCAGCGACTTCCTCAAG                                                                                                                                                      <  1:270406/236‑1                                                                                                                                                                                               CCAGTTCGCCGACCGGGAACAGTGTGCGGGCGATTTCCTGGCCGCCGCCAAGAAGAAAGATTCCACCGGCATCTGCTTCATTGGCGAGCGCCGCTTCAGCGACTTCCTCAAGCAGTACCTGCCGGCCCAGCCGGGCGACATCGAAACCACCGAAGGTGAAGTGATCGGCCGCCACCATGGCCTGATGTACCACCCCATCGGCCAGCGCCAGGGCCTGGGCATTGGCGGCCTGAAG                           >  1:40487/1‑235                                                                                                                                                                                                CAGTGCGCCGACCGGGAACAGTGTGCGGGCGATTTCCGGGCCGCCGCCAAGAAGAAAGATTCCCCCGGCATCTGCTTCATT                                                                                                                                                                                    <  2:254743/81‑1                                                                                                                                                                                                                                             GCCAAGAAGCAAGACTCCACCGGCATCTGCTTCATTGGCGAGCGCCGCTTCAGCGACTTCCTCAAGCAGTACCTGCCGGCCCAGCCGGGCGACATCGAAACCACCGAAGGTGAAGTGATCGGCCGCCACCATGGCCTGATGTACCACACCATCGGCCAGCGCCAGGGCCTGGGCATTGGCGGCCTGAAGGATGCCAGTGACGAGCCGTGGTACG  <  2:649463/214‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TACATCAGGCCATGGTGGCGGCCGATCACTTCACCTTCGGTGGTTTCGATGTCGCCCGGCTGGGCCGGCAGGTACTGCTTGAGGAAGTCGCTGAAGCGGCGCTCGCCAATGAAGCAGATGCCGGTGGAATCTTTCTTCTTGGCGGTGGCCAGGCCGTGTTTTTCGGCGATGGCGCGTACTTCGGGCTTTTCCAGTTCGCCGACCGGGAACAGTGTGCGGGCGATTTCCTGGCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4525794‑4525558 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgCCAAGAAGAAAGATTCCACCGGCATCTGCTTCATTGGCGAGCGCCGCTTCAGCGACTTCCTCAAGCAGTACCTGCCGGCCCAGCCGGGCGACATCGAAACCACCGAAGGTGAAGTGATCGGCCGCCACCATGGCCTGATGTACCACACCATCGGCCAGCGCCAGGGCCTGGGCATTGGCGGCCTGAAGGATGCCAGTGACGAGCCGTGGTACG  >  AE015451/4525653‑4525865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.