New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4581891	46 (1.150)	4 (0.110)	4/316	NT	8.6%	coding (1537/3321 nt)	treSB	fused trehalose synthase B/maltokinase
	?	AE015451	= 4582002	42 (1.120)					coding (1426/3321 nt)	treSB	fused trehalose synthase B/maltokinase

AGCAGTTCTTCCATGCGCTTGCGCAGTACCAATGTGGTCAATTCGGGTAACCCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTGTCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4581656‑4581891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcagcctgCGTACCCTCACGCCCAGCAACCGCCGCATCCTTGCCTATATCCGCGAGTATACCGACGCCGACGGCAATACCGAGGTCATCCTCTGCGTGGCCAACGTGTCCCGTGCCGCCCAGGCTGCCGAACTCGAATTGTCACAATACGCCGACAAAGT  <  AE015451/4582002‑4581851                                                                                                                                                                                                                                                                                                                                                                                                      AGCAGTTCTTCCATGCGCTTGCGCAGTACCAATGTGGTCAATTCGGGTAACCCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTGTCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTG                                                                                                                                                          >  1:642100/1‑236        CTTCCATGCGCTTGCGCAGTACCAATGTGGTCAATTCGGGTAACCCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTTGCGGCGTATTGTGACAATTCGAGTTCG                                                                                                                                                                  >  1:2602/1‑221                                                                               GGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTTCACCGGGACTTTGTCGGCGTATTGTGAAAAGTCGAGCTCGGCAGCCgg                                                                                                                                                          >  1:572635/1‑156                                                                                                                                                                                  CCCAGCATCTCCACCGGTACTTTGTCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGCGTACCCTCACGTCCAGCAACCGCCGCATCCTTGCCTCTATCCGCGAGTATACCGACGCCCAC                                                                                           >  1:353016/1‑122                                                                                                                                                                                            CCACCGGTACTTTGTCGGCGTATTGTGACAATTCGAGGTCGGCAGCCTGCGTACCCTCACGCCCAGCAACCGCCGCATCCTTGCCTATATCCGC                                                                                                             >  2:572634/1‑94                                                                                                                                                                                                     CTTTGTCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGCGTACCCTCACGCCCAGCAACCGCCGCATCCTTGCCTATATCCGCGAGTATACCGACGCCGACGGCAATACCGAGGTCATCCTCTGCGTGGCCAACGTGTCCCGTGCCGCCCCGGCTGCCGAACTCGA                          >  1:720829/1‑168                                                                                                                                                                                                      TTTGTCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTGCGTACCCTCACGCCCAGCAACCGCCGCATCCTTGCCTATATCCG                                                                                                              >  1:479157/1‑83                                                                                                                                                                                                                                        GCCTGCGCACCCTCCCCCCCAGAAACCGCCGCATCCTTGCCTATATCCGCGAGTATACCGACGCCGACGGCAATACCGAGGTCATCCTCTGCGTGGCCAACGTGTCCCGTGCCGCCCAGGCTGCCGAACTCGAATTGTCACAATACGCCGACAAAGT  <  1:94355/157‑1                                                                                                                                                                                                                                                                                                                                                                                                      AGCAGTTCTTCCATGCGCTTGCGCAGTACCAATGTGGTCAATTCGGGTAACCCCTCGGTGGGCTGGATGTGCCAGCTGGGCATGCGATCGCGGCTGGCCAGCAGGAACCAGTAGAACGCATAAGGTGGCAAGGTCAGCAGAAACGGCAGTTGGCCTATTGGCGGGAACGCGCTGCCACCCAGCATCTCCACCGGTACTTTGTCGGCGTATTGTGACAATTCGAGTTCGGCAGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4581656‑4581891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcagcctgCGTACCCTCACGCCCAGCAACCGCCGCATCCTTGCCTATATCCGCGAGTATACCGACGCCGACGGCAATACCGAGGTCATCCTCTGCGTGGCCAACGTGTCCCGTGCCGCCCAGGCTGCCGAACTCGAATTGTCACAATACGCCGACAAAGT  <  AE015451/4582002‑4581851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.