| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 4715992 | 38 (0.950) | 3 (0.080) | 3/318 | NT | 7.7% | coding (1223/1932 nt) | PP_4173 | Sensor histidine kinase/response regulator |
| ? | AE015451 | = 4716028 | 36 (0.950) | coding (1259/1932 nt) | PP_4173 | Sensor histidine kinase/response regulator | |||||
ACTGCCGGCCGGCATCGAGCAGCTGCAGGTGAACGGCGACCCCACGCGCATCCGCCAGATCCTGCTGAACCTGATAGGCAACGCCCTGAAGTTCACCGAACGTGGCCAGGTGCAAGTCGACGCACGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4715864‑4715992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcacgctgCAGGTCAGCCAGATCAACTGCCGGTCGAGCACCTGCCAGCGTGCGTCGACTTGCACCTGGCCACGTTCGGTGAACTTCAGGGCGTTGCCTATCAGGTTCAGCAGGATCTGGCGGATGCGCGTGGGGTCGCCGTTCACCTGCAGCTGCTCGATGCCGGCCGGCAGTTGCAGGTGCAGGCCCAGGCCGCGTTGCTGGG < AE015451/4716028‑4715833 ACTGCCGGCCGGCATCGAGCAGCTGCAGGTGAACGGCGACCCCACGCGCATCCGCCAGATCCTGCTGAACCTGATAGGCAACGCCCTGAAGTTCACCGAACGTGGCCAGGTGCAAGTCGACGCACGCT > 1:599173/1‑128ACTGCCGGCCGGCATCGAGCAGCTGCAGGTGAACGGCGACCCCACGCGCATCCGCCAGATCCTGCTGAACCTGATAGGCAACGCCCTGAAGTTCACCGAACGTGGCCAGGTGCAAGTCGACGCACGCT < 2:599172/128‑1 CGCCAGATCCTGCTGAACCTGATAGGCAACGCCCTGAAGTTCACCGAACGTGGCCAGGTGCAAGTCGACGCACGCTGCAGGTCAGCCAGATCAACTGCCGGTCGAGCACCTGCCAGCGTGCGTCGACTTGCACCTGGCCACGTTCGGTGAACTTCAGGGCGTTGCCTATCAGGTTCAGCAGGATCTGGCGGATGCGC > 2:702976/1‑197 gACGCCCTGAAGTTCACCGACCGTGGCCAGGTGCAAGTCGACGCACGCTGCAGGTCAGCCAGATCACCTGCCTGTCGAGCACCTGCCAGCGTGCGTCGTCTTGCACCTGGCCACGTTCGGTGAACTTCAGGGCGTTGCCTATCAGGTTCAGCA < 1:325021/152‑1 CAAGTCGACGCACGCTGCAGGTCAGCCAGATCAACTGCCGGTCGAGCACCTGCCAGCGTGCGTCGACTTGCACCTGGCCACGTTCGGTGAACTTCAGGGCGTTGCCTATCAGGTTCAGCAGGATCTGGCGGGTGCGCGTGGGGTCGCCGTTCACCTGCAGCTGCTCGATGCCGGCCGGCAGTTGGAGGTGCAGGCCCAGGCCGCGGTGCTGGG > 1:174052/1‑213 CACGCTGCAGGTCAGCCAGATCAACTGCCGGTCGAGCACCTGCCAGCGTGCGTCGACTTGCACCTGGCCACGTTCGGTGAACTTCAGGGCGTTGCCTATCAGGTTCAGCAGGATCTGGCGGATGCGCGTGGGGTCGCCGTTCACCTGCAGCTGCTCGATGCCGGCCGGCAGTTGCAGGTGCAGGCCCAGGCCGCGTTGCTGG < 1:512108/202‑1 CACGCTGCAGGTCAGCCAGATCAACTGCCGGTCGAGCACCTGCCAGCGTGCGTCGACTTGCACCTGGCCACGTTCGGTGAACTTCAGGGCGTTGCCTATCAGGTTCAGCAGGATCTGGCGGATGCGCGTGGGGTCGCCGTTCACCTGCAGCTGCTCGATGCCGGCCGGCAGTTGCAGGTGCAGGCCCAGGCCGCGTTGCTGG > 2:512107/1‑202 ACTGCCGGCCGGCATCGAGCAGCTGCAGGTGAACGGCGACCCCACGCGCATCCGCCAGATCCTGCTGAACCTGATAGGCAACGCCCTGAAGTTCACCGAACGTGGCCAGGTGCAAGTCGACGCACGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/4715864‑4715992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcacgctgCAGGTCAGCCAGATCAACTGCCGGTCGAGCACCTGCCAGCGTGCGTCGACTTGCACCTGGCCACGTTCGGTGAACTTCAGGGCGTTGCCTATCAGGTTCAGCAGGATCTGGCGGATGCGCGTGGGGTCGCCGTTCACCTGCAGCTGCTCGATGCCGGCCGGCAGTTGCAGGTGCAGGCCCAGGCCGCGTTGCTGGG < AE015451/4716028‑4715833 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |