New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4908036	23 (0.580)	3 (0.080)	3/316	NT	9.7%	intergenic (‑12/‑270)	PP_4317/PP_4318	conserved protein of unknown function/transposase
	?	AE015451	4909961 =	34 (0.900)					intergenic (+354/+125)	PP_4318/PP_4319	transposase/conserved exported protein of unknown function

ACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4907792‑4908036 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcccgtcaCCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAAAGCAGAAGCAGAAGCAGAAGCAGCAGAAGCAGATACAGAAACAGTGTTACTGTGCGAACGCCCGCCCTAACCCACCTGGTACACCACTGCTGTCAGTTTCCTGCCAAGGCCCATTCGGGCTCAACGACCAGCTCCAGCCGTTATCAAACCGAT  >  AE015451/4909961‑4910192                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGA                                                                                                                                                                                                                                                   >  1:274800/1‑236    TCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGAAGGGAGGTGACGGGCATGGATGC                                                                                                                                                                                                                                                <  1:554199/236‑1                                                               AACAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGC                                                                                                                                                                                      >  1:343205/1‑235                                                                   AGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCACCTCCCTTCGCAAGCCCTGC                                                                                                                                                                                                                      <  1:438898/199‑1                                                                                                                                                      CTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAAAGCAGAAGCAGAAGCAGAAGCAGCAGAAGCAGATACAGAAACAGTGTTACTGTGCGAAC                                                                                                <  2:343204/234‑1                                                                                                                                                                                                                                                CCGTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAATAGCAGAAGCAGAAGCAGAAGCAGCAGAAGCAGATACAGAAACAGTG                                                                                                             <  2:410193/131‑1                                                                                                                                                                                                                                                  GTCACCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAAAGCAGAAGCAGAAGCAGAAGCAGCAGAAGCAGATACAGAAACAGTGTTACTGTGCGAACGCCCGCCCTAACCCACCTGGTACACCACTGCTGTCAGTTTCCTGCCAAGGCCCATTCGGGCTCAACGACCAGCTCCAGCCGTTATCAAACCGAT  <  1:304316/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACCTCCGGGTGAATTCGAGGCGTCATTATGCGGAGTCACCGGCCAGTACAGTCAATGGAAATAACAAGGCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCGGAGGCAGGTGACGGGCATGGATGCCCGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4907792‑4908036 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcccgtcaCCTCCCTTCGCAAGCCCTGCGCTCGGCCTTCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCGCTTACAAGCAAAAGCAGAAGCAGAAGCAGAAGCAGCAGAAGCAGATACAGAAACAGTGTTACTGTGCGAACGCCCGCCCTAACCCACCTGGTACACCACTGCTGTCAGTTTCCTGCCAAGGCCCATTCGGGCTCAACGACCAGCTCCAGCCGTTATCAAACCGAT  >  AE015451/4909961‑4910192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.