New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 5234910 = | 16 (0.400) | 3 (0.080) | 3/318 | NT | 12.0% | coding (244/2325 nt) | fecA | outer membrane ferric citrate porin |
? | AE015451 | 5235001 = | 29 (0.770) | coding (335/2325 nt) | fecA | outer membrane ferric citrate porin |
TCGACTGCTGCGCCAGCAGCAGGGGCTGTGATGGGTTGCAGGCTGAACGCGTTGTCGGTTTCCTGGCGTGCTTGCAGGCCGCTGCCGCGCAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/5235004‑5234910 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagcagTCGAGCTAGGCGCCTCCACCGTGGTCGGCGACTGGCTGGCCGAGGCGCAGCAGGACAACGTATTCGAGCACCCCGGCGCCCGCGACGTAGTGCGCCGTGAGGAATTCGAACGCAACGGTGCTACCACCGCCCGCGAAGTGCTCAACCGCATCCCCGGGGTCAACGCCCCCGACAACAACGGTACCGGCAGCCATGACCTGGCGCTGAACT > AE015451/5235001‑5235210 TCGACTGCTGCGCCAGCAGCAGGGGCTGTGATGGGTTGCAGGCTGAACGCGTTGTCGGTTTCCTGGCGTGCTTGCAGGCCGCTGCCGCGCAG < 2:8183/92‑1 GCTGAACGCGTTGTCGGTTTCCTGGCGTGCTTGCAGGCCGCTGCCGCGCAGCAGTCGAGCTAGGCGCCTCCACCGTGGTCGGCGACTGGCTGGCCGAGGCGCAGCAGGACAACGTATTCGAGCACCCCGGCGCCCGCGACGTAGTGCGCCGTGAGGAATTCGAACGC > 1:314459/1‑167 GCTGAACGCGTTGTCGGTTTCCTGGCGTGCTTGCAGGCCGCTGCCGCGCAGCAGTCGAGCTAGGCGCCTCCACCGTGGTCGGCGACTGGCTGGCCGAGGCGCAGCAGGACAACGTATTCGAGCACCCCGGCGCCCGCGACGTAGTGCGCCGTGAGGAATTCGAACGC < 2:314458/167‑1 TTGCAGGCCGCTGCCGCGCAGCAGTCGAGCTAGGCGCCTCCACCGTGGTCGGCGACTGGCTGGCCGAGGCGCAGCAGGACAACGTATTCGAGCACCCCGGCGCCCGCGACGTAGTGCGCCGTGAGGAATTCGAACGCAACGGTGCTACCACCGCCCGCGAAGTGCTCAACCGCATCCCCGGGGTCAACGCCCCCGACAACAACGGTACCGGCAGCCATGACCTGGCGCTGAACT > 1:475361/1‑234 GCAGCAGTCGAGCTAGGCGCCTCCACCGTGGTCGGCGACTGGCTTGCCGAGGCGCAGCAGGACAACGTATTCGAGCACCCCGGCGCCCGCGACGTAGTGCGCCGTGAGGAATTCGAACGCAACGGTGCTACCACCGCCCGCGAAGTGCTCAACCGCATCC > 1:334610/1‑160 TCGACTGCTGCGCCAGCAGCAGGGGCTGTGATGGGTTGCAGGCTGAACGCGTTGTCGGTTTCCTGGCGTGCTTGCAGGCCGCTGCCGCGCAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/5235004‑5234910 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagcagTCGAGCTAGGCGCCTCCACCGTGGTCGGCGACTGGCTGGCCGAGGCGCAGCAGGACAACGTATTCGAGCACCCCGGCGCCCGCGACGTAGTGCGCCGTGAGGAATTCGAACGCAACGGTGCTACCACCGCCCGCGAAGTGCTCAACCGCATCCCCGGGGTCAACGCCCCCGACAACAACGGTACCGGCAGCCATGACCTGGCGCTGAACT > AE015451/5235001‑5235210 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |