New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5631962	57 (1.430)	3 (0.080)	3/326	NT	5.1%	coding (1492/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase
	?	AE015451	= 5632005	57 (1.470)					coding (1535/3954 nt)	putA	proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase

CCGCCACCGCCTGATGATCCGCCTGGTAAAAGGCGCCTACTGGGACAGCGAGATCAAGCGTGCCCAGGTCGAAGGCCTGGAAGGCTACCCGGTCTATACCCGCAAGGTGTACACCGACGTGTCCTACGTCGCCTGCGCCCGCAAGCTGCTGGCCGTGCCAGAAGCCATCTACCCGCAGTTCGCCACCCACAACGCCCACACCCTGTCGGCCATCTACCACATTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5631736‑5631962 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgTGCAGGCACTGGAACTCGTACTGGCCCGGGTAATAGTTCTGCCCGGCAATGTGGTAGATGGCCGACAGGGTGTGGGCGTTGTGGGTGGCGAACTGCGGGTAGATGGCTTCTGGCACGGCCAGCAGCTTGCGGGCGCAGGCGACGTAGG  <  AE015451/5632005‑5631858                                                                                                                                                                                                                                                                                                                                                                                         CCGCCACCGCCTGATGATCCGCCTGGTAAAAGGCGCCTACTGGGACAGCGAGATCAAGCGTGCCCAGGTCGAAGGCCTGGAAGGCTACCCGGTCTATACCCGCAAGGTGTACACCGACGTGTCCTACGTCGCCTGCGCCCGCAAGCTGCTGGCCGTGCCAGAAGCCATCTACCCGCAGTTCGCCACCCACAACGCCCACACCCTGTCGGCCATCTACCACATTGCCGTGCAGGC                                                                                                                                               <  1:265704/234‑1                                                                                                                                                 GCTGCTGGCCGTGCCAGAAGCCATCCACCCGCAGTTCGCCACCCACAACGCCCACACCCTGTCGGCCATCTACCCCATTGCC                                                                                                                                                       >  2:109456/1‑82                                                                                                                                                                           ACCCGCAGTTCGCCACCCCCAACGCCCCCCCCCTGTCGGCCATCTACCACATTGCCGTGCAGGCACTCGAACTCGTCCTGGCCCGGGTAATAGTTCTGCCCGGCAATGTGGTAGATGGCCGACAGGGTGTGGGCGTTGTGGGTGGCGAACTGCGGGTAGATGGCTTCTGGCACGGCCAGCAGCTTGCGGGCGCAGGCGACGTA    <  1:210040/203‑1                                                                                                                                                                                    TCGCCACCCACAACGCCCACACCCTGTCGGCCATCTACCACATTGCCGTGCAGGCACTGGAACTCGTACTGGCCCGGGTAATAGTTCTGCCCGGCAATGTGGTAGATGGCCGACAGGGTGGGGGCGGTGTGGGGGGCGAACTGCGGGTAGATGGCTGCTGGCACGGCCAGCAGCTTGCGGGCGCAGGGGGCGTAGG  >  2:210040/1‑196                                                                                                                                                                                                                                                                                                                                                                                         CCGCCACCGCCTGATGATCCGCCTGGTAAAAGGCGCCTACTGGGACAGCGAGATCAAGCGTGCCCAGGTCGAAGGCCTGGAAGGCTACCCGGTCTATACCCGCAAGGTGTACACCGACGTGTCCTACGTCGCCTGCGCCCGCAAGCTGCTGGCCGTGCCAGAAGCCATCTACCCGCAGTTCGCCACCCACAACGCCCACACCCTGTCGGCCATCTACCACATTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5631736‑5631962 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgTGCAGGCACTGGAACTCGTACTGGCCCGGGTAATAGTTCTGCCCGGCAATGTGGTAGATGGCCGACAGGGTGTGGGCGTTGTGGGTGGCGAACTGCGGGTAGATGGCTTCTGGCACGGCCAGCAGCTTGCGGGCGCAGGCGACGTAGG  <  AE015451/5632005‑5631858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.