New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5825393 =	58 (1.450)	3 (0.080)	3/322	NT	5.8%	coding (80/723 nt)	trmB	tRNA (guanine‑N(7)‑)‑methyltransferase
	?	AE015451	5825416 =	41 (1.070)					coding (57/723 nt)	trmB	tRNA (guanine‑N(7)‑)‑methyltransferase

GGCCATCGCCCACGCCCAGCAGCCAGTGCTGATGGCCGAGGCCATGAAACACGCCATTGTCGCGGGTCGCATGGCCTACCTGGCTGGTCGTATGCCGAAGAAACTCTATGCCAGCGCCTCCTCGCCGCTGGATGGTCTGATCAAGTAAGAGCAACTGATGACTGAATCGCACGATACGCCGATCACCCCCGACGGCGAAGCCCGCCCACACCGCCGCATCAAGAGCTTCGTGATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5825629‑5825393 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatgcgGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCTGGGCGTGGGCGATGGCCGAGTTCATCAGCACCGCC  >  AE015451/5825416‑5825647                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGCCATCGCCCACGCCCAGCAGCCAGTGCTGATGGCCGAGGCCATGAAACACGCCATTGTCGCGGGTCGCATGGCCTACCTGGCTGGTCGTATGCCGAAGAAACTCTATGCCAGCGCCTCCTCGCCGCTGGATGGTCTGATCAAGTAAGAGCAACTGATGACTGAATCGCACGATACGCCGATCACCCCCGACGGCGAAGCCCGCCCACACCGCCGCATCAAGAGCTTCGT                                                                                                                                                                                                                                                >  1:225143/1‑231                                                       CATTGTCGCGGGTCGCATGGCCTACCTGGCTGGTCGTATGCCGAAGAAACTCTATGCCAGCGCCTCCTCGCCGCTGGATGGTCTGATCAAGTAAGAGCAACTGATGACTGAATCGCACGATACGCCGATCACCCCCGACGGCGAAGCCCGCCCACACCGCCGCATCAAGAGCTTCGTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGGGATCGGCG                                                                                                                                                                                                    >  1:115499/1‑221                                                                  GTCGCATGGCCTACCTGGCTGGTCGTATGCCGAAGAAACTCTATGCCAGCGCCTCCTCGCCGCTGGATGGTCTGATCAAGTAAGAGCAACTGATGACTGAATCGCACGATACGCCGATCACCCCCGACGGCGAAGCCCGCCCACACCGCCGCATCAAGAGCTTCGTGATGCG                                                                                                                                                                                                                                          >  2:566978/1‑172                                                                                                                                                                                                      AAGCCCGCCCACACCGCCGCATCAAGAGCTTCGTGATGCGGCGGTGTGGGCGGGCTTCGCCGTCGGG                                                                                                                                                                                                               <  2:115499/67‑1                                                                                                                                                                                                        GCCCGCCCACACCGCCGCATCAAGAGCTTCGTGATGCGGCGGTGTGGGCGGGCCTCGCCGTCGGGGGg                                                                                                                                                                                                            >  2:120815/1‑67                                                                                                                                                                                                                                           GCGGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCTGGGCGTGGGCGATGGCCGAGTTCATCAGCACCGCC  <  1:349296/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGCCATCGCCCACGCCCAGCAGCCAGTGCTGATGGCCGAGGCCATGAAACACGCCATTGTCGCGGGTCGCATGGCCTACCTGGCTGGTCGTATGCCGAAGAAACTCTATGCCAGCGCCTCCTCGCCGCTGGATGGTCTGATCAAGTAAGAGCAACTGATGACTGAATCGCACGATACGCCGATCACCCCCGACGGCGAAGCCCGCCCACACCGCCGCATCAAGAGCTTCGTGATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5825629‑5825393 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatgcgGCGGTGTGGGCGGGCTTCGCCGTCGGGGGTGATCGGCGTATCGTGCGATTCAGTCATCAGTTGCTCTTACTTGATCAGACCATCCAGCGGCGAGGAGGCGCTGGCATAGAGTTTCTTCGGCATACGACCAGCCAGGTAGGCCATGCGACCCGCGACAATGGCGTGTTTCATGGCCTCGGCCATCAGCACTGGCTGCTGGGCGTGGGCGATGGCCGAGTTCATCAGCACCGCC  >  AE015451/5825416‑5825647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.