New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	5838089 =	45 (1.130)	3 (0.080)	3/322	NT	6.2%	coding (890/1371 nt)	PP_5116	conserved protein of unknown function
	?	AE015451	5838127 =	48 (1.250)					coding (928/1371 nt)	PP_5116	conserved protein of unknown function

AGCTCCAGCTGGGTGGGCCCTTCGTCGATGAACGCCTGCAGCAGGGTTTCTACCAGTGCCTGCGTGCCCTGCACATGCTGGGGCGCAACCTCCCATTCCACGGTGAACAGGCCGCCTGCACTCAATGGCAATACATGCGTGTGCACGCCGTAGGTCAGGCCGCGTCGTTGGCGCAACTCCACCATCAAGCGCGACTCGAGGCCCTCTCCCAGAACAGCGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5838311‑5838089 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcttgATGGTGGAGTTGCGCCAACGACGCGGCCTGACCTACGGCGTGCACACGCATGTATTGCCATTGAGTGCAGGCGGCCTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAA  >  AE015451/5838127‑5838264                                                                                                                                                                                                                                                                                                                                                                           AGCTCCAGCTGGGTGGGCCCTTCGTCGATGAACGCCTGCAGCAGGGTTTCTACCAGTGCCTGCGTGCCCTGCACATGCTGGGGCGCAACCTCCCATTCCACGGTGAACAGGCCGCCTGCACTCAATGGCAATACATGCGTGTGCACGCCGTAGGTCAGGCCGCGTCGTTGGCGCAACTCCACCATCAAGCGCGACTCGAGGCCCTCTCCCAGAACAGCGCTTG                                                                                                                                            <  1:239215/223‑1                                                                                                                                                     CGTAGGTCAGGCCGCGTCGTTGGCGCAACTCCACCATCAAGCGCGACTCGAGGCCCTCTCCCAGAACAG                                                                                                                                                  <  2:259221/69‑1                                                                                                                                                      GTAGGTCAGGCCGCGTCGTTGGCGCAACTCCACCATCAAGCGCGACTCGAGGCCCTCTCCCAGAACAGCGCTTGATGGTGGAGTTGCGCCAACGACGCGGCCTGACCTACGGCGTGCACACGCATGTATTGCCATTGAGTGCAGGCGGCCT                                                               <  2:459991/151‑1                                                                                                                                                                 CGCGTCGTTGGCGCAACTCCACCATCAAGCGCGACTCGAGGCCCTCTCCCAGAACAGCGCTTGATGGTGGAGTTGCGCCAACGACGCGGCCTGACCTACGGCGTGCACACGCATGTATTGCCATTGAGTGCAGGCGGCCTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAA  <  1:577943/201‑1                                                                                                                                                                            CGCAACTCCACCATCAAGCGCGACTCGAGGCCCTCCCCCAGAACAGCGCTGGATGGTTAAGGTGCGCCAACG                                                                                                                        >  2:577942/1‑72                                                                                                                                                                                                                                                                                                                                                                           AGCTCCAGCTGGGTGGGCCCTTCGTCGATGAACGCCTGCAGCAGGGTTTCTACCAGTGCCTGCGTGCCCTGCACATGCTGGGGCGCAACCTCCCATTCCACGGTGAACAGGCCGCCTGCACTCAATGGCAATACATGCGTGTGCACGCCGTAGGTCAGGCCGCGTCGTTGGCGCAACTCCACCATCAAGCGCGACTCGAGGCCCTCTCCCAGAACAGCGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/5838311‑5838089 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcttgATGGTGGAGTTGCGCCAACGACGCGGCCTGACCTACGGCGTGCACACGCATGTATTGCCATTGAGTGCAGGCGGCCTGTTCACCGTGGAATGGGAGGTTGCGCCCCAGCATGTGCAGGGCACGCAGGCACTGGTAGAA  >  AE015451/5838127‑5838264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.