New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 585768925 (0.630)4 (0.100) 4/322 NT 13.6% coding (238/1371 nt) PP_5134 conserved protein of unknown function
?AE015451 = 5857694 27 (0.710)coding (243/1371 nt) PP_5134 conserved protein of unknown function

ATGGCCATGACTGAGCCACTGAAACTGGCCGTGGTCGGCCATACCAATGTTGGCAAAACCTCGCTACTGCGCACCCTGACCCGCGACGTCGGTTTTGGCGAAGTGTCCCACCGCCCCAGCACTACTCGCCATGTGGAAGGTGCACGGCTGTCGGTGGACGGTGAACCTTTGCTGGAGCTGTACGACACGCCCGGCCTGGAAGATGCCATCGCCCTGCTCGACTACCTTGAACGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5857452‑5857689
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctggGCGCTCCAGGCGTTCAAGGTAGTCGAGCAGGGCGATGGCATCTTCCAGGCCGGGCGTGTCGTACAGCTCCAGCAAAGGTTCACCGTCCACCGACAGCCGTGCACCTTCCACATGGCGAGTAGTGCTGGGGCGGTGGGACACTTCGCCAAAACCGACGTCGCGGGTCAGGGTGCGCAGTAGCGAGGTTTTGCCAACATTGGTATGGCCGACCACGGCCAGTTTCAGTGGCTCA  <  AE015451/5857694‑5857463
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
ATGGCCATGACTGAGCCACTGAAACTGGCCGTGGTCGGCCATACCAATGTTGGCAAAACCTCGCTACTGCGCACCCTGACCCGCGACGTCGGTTTTGGCGAAGTGTCCCACCGCCCCAGCACTACTCGCCATGTGGAAGGTGCACGGCTGTCGGTGGACGGTGAACCTTTGCTGGAGCTGTACGACACGCCCGGCCTGGAAGATGCCATCGCCCTGCTCGACTACCTTGAACGCCT                                                                                                                                                                                                                                            >  1:523632/1‑236
             AGCCACTGAAACTGGCCGTGGTCGGCCATACCAATGTTGGCAAAACCTCGCTACTGCGCACCCTGACCCGCGACGTCGGTTTTGGCGAAGTGTCCCACCGCCCCAGCACTACTCGCCATGTGGAAGGTGCACGGCTGTCGGTGGACGGTGAACCTTTGCTGGAGCTGTACGACACGCCCGGCCTGGAAGATGCCATCGCCCTGCTCGACTACCTTGAACGC                                                                                                                                                                                                                                              <  1:309587/221‑1
                CACTGAAACTGGCCGTGGTCGGCCATACCAATGTTGGCAAAACCTCGCTACTGCGCACCCTGACCCGCGACGTCGGTTTTGGCGAAGTGTCCCACCGCCCCAGCACTACTCGCCATGTGGAAGGTGCACGGCTGTCGGTGGACGGTGAACCTTTGCTGGAGCTGTACGACACGCCCGGCCTGGAAGATGCCATCTCCCTGCTCGACTCCCTTGAACGCCTtga                                                                                                                                                                                                                                         >  1:164319/1‑220
                                                            TCGCTACTGCGCACCCTGACCCGCGACGTCGGTTTTGGCGAAGTGTCCCACCGCCCCAGCACTACTCGCCATGTGGAAGGTGCACGGCTGTCGGTGGACGGTGAACCTTTGCTGGAGCTGTACGACACGCCCGGCCTGGAAGATGCCATCGCCCTGCTCGCCTACCTTTAACGCCCGG                                                                                                                                                                                                                                          >  2:59652/1‑178
                                                                                                                                                                                   GTACGACACGCCCGGCCTGGAAGATGCCATCGCCCTGCTCGCCTACCTTGACCGCCTGGGCGCTCCAGGCGTTCAAGGTACTTTAGCAGGGCGATGGCATCTTCCAGGCCCGGCGTGTCGTACAGCTCTAGCAAAGGTTCACCGTCTACCGACAGCCCTGCACCTTC                                                                                                                              >  1:410129/1‑167
                                                                                                                                                                                                         GATGCCATCGCCCTGCTCGACTACCTTGAACGCCTGGGCGCTCCAGGCGTTCAAGGTAGTCGAGCAGGGCGATGGCATCTTCCAGGCCGGGC                                                                                                                                                                                   >  2:552634/1‑92
                                                                                                                                                                                                              CATCGCCCTGCTCGACTACCTTGAACGCCTGGGCGCTCCAGGCGTTCAAGGTAGTCGAGCAGGGCGATGGCATCTTCCAGGCCGGGCGTGTCGTACAGCTCCAGCAAAGGTTCACCGTCCACCGACAGCC                                                                                                                                        <  1:129284/130‑1
                                                                                                                                                                                                              CATCGCCCTGCTCGACTACCTTGAACGCCTGGGCGCTCCAGGCGTTCAAGGTAGTCGAGCAGGGCGATGGCATCTTCCAGGCCGGGCGTGTCGTACAGCTCCAGCAAAGGTTCACCGTCCACCGACAGCC                                                                                                                                        >  2:129284/1‑130
                                                                                                                                                                                                                                          CTGGGCGCTCCAGGCGTTCAAGGTAGTCGAGCAGGGCGATGGCATCTTCCAGGCCGGGCGTGTCGTACAGCTCCAGCAAAGGTTCACCGTCCACCGACAGCCGTGCACCTTCCACATGGCGAGTAGTGCTGGGGCGGTGGGACACTTCGCCAAAACCGACGTCGCGGGTCAGGGTGCGCAGTAGCGAGGTTTTGCCAACATTGGTATGGCCGACCACGGCCAGTTTCAGTGGCTCA  <  1:299604/236‑1
                                                                                                                                                                                                                                           TGGGCGCTCCAGGCGTTCAAGGTAGTCGAGCAGGGCGATGGCATCTTCCAGGCCGGGCGTGTCGTACAGCTCCAGCAAAGGTTCACCGTCCACCGACAGCCGTGCACCTTCCACATGGCGAGTAGTGCTGGGGCGGTGGGACACTTCGCCAAAACCGACGTCGCGGGTCAGGGTGCGCAGTAGCGAGGTTTTGCCAACATTGGTATGGCCGACCACGGCCAGTTTCAGTG       <  1:610395/230‑1
                                                                                                                                                                                                                                            GGGCGCTCCAGGCGTTCAAGGTAGTCGAGCAGGGCGATGGCATCTTCCAGGCCGGGCGTGTCGTACAGCTCCAGCAAAGGTTCACCGTCCAC                                                                                                                                                <  1:552635/92‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
ATGGCCATGACTGAGCCACTGAAACTGGCCGTGGTCGGCCATACCAATGTTGGCAAAACCTCGCTACTGCGCACCCTGACCCGCGACGTCGGTTTTGGCGAAGTGTCCCACCGCCCCAGCACTACTCGCCATGTGGAAGGTGCACGGCTGTCGGTGGACGGTGAACCTTTGCTGGAGCTGTACGACACGCCCGGCCTGGAAGATGCCATCGCCCTGCTCGACTACCTTGAACGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5857452‑5857689
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcctggGCGCTCCAGGCGTTCAAGGTAGTCGAGCAGGGCGATGGCATCTTCCAGGCCGGGCGTGTCGTACAGCTCCAGCAAAGGTTCACCGTCCACCGACAGCCGTGCACCTTCCACATGGCGAGTAGTGCTGGGGCGGTGGGACACTTCGCCAAAACCGACGTCGCGGGTCAGGGTGCGCAGTAGCGAGGTTTTGCCAACATTGGTATGGCCGACCACGGCCAGTTTCAGTGGCTCA  <  AE015451/5857694‑5857463

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.