New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1731163 =	15 (0.380)	3 (0.090)	3/280	NT	23.5%	intergenic (‑76/+115)	dapE/PP_1526	Succinyl‑diaminopimelate desuccinylase/putative Beta‑(1‑3)‑glucosyl transferase
	?	AE015451	1731255 =	7 (0.210)					intergenic (‑168/+23)	dapE/PP_1526	Succinyl‑diaminopimelate desuccinylase/putative Beta‑(1‑3)‑glucosyl transferase

CCGACGGCGCCCAGACGGTTCATCATCTGCGCCTGGCAATCGGCGTCGACGGGGGTGACCGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCA  >  AE015451/1730963‑1731375                                                                                                                                                                                                         |                                                                                                                                                                                                                     ccGACGGCGCCCAGACGGTTCATCATCTGCGCCTGGCAATCGGCGTCGACGGGGGTGACCGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACt                                                                                                                                                                                    <  2:511317/235‑1 (MQ=255)             gcgttgggtatctacctggtgcaggggctgccgagttcggacatgcgcttctgggtggcgatgttgctggtgcagtcgttgccttatgtggcagcgctggtgatggcgttcctgtcgtcgctgcccaagcccgcagaaaaggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCt                                                                                                                                                                                                >  2:666900‑M1/189‑211 (MQ=255)                                                     gggTGACCGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCcg                                                                                                                                    <  2:267648/231‑1 (MQ=255)                                                                                           tGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCg                                                                                                                                                       >  1:489782/1‑174 (MQ=255)                                                                                                                                       cGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTcgc                                                                                                                                                                                                             >  1:280087/1‑76 (MQ=255)                                                                                                                                       cGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTcgc                                                                                                                                                                                                             <  2:280086/76‑1 (MQ=255)                                                                                                                                                        aggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGc                                                                                                                                                                    <  2:285910‑M1/51‑1 (MQ=255)                                                                                                                                                        aggctgcccaagcgcagcaggcttgaagttgcctgggccgacctgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGc                                                                                                                                                                    >  1:285911‑M1/50‑100 (MQ=255)                                                                                                                                                                  aGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCGCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTgg                                                                                 <  1:190679/173‑1 (MQ=255)                                                                                                                                                                                    cAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGc                                                                                                                                                                                                     <  2:120896/39‑1 (MQ=255)                                                                                                                                                                                    cAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGc                                                                                                                                                                                                     >  1:120896/1‑39 (MQ=255)                                                                                                                                                                                         ggTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGc                                                         >  1:508651/1‑174 (MQ=255)                                                                                                                                                                                         ggTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCa                                   >  1:462030/1‑196 (MQ=255)                                                                                                                                                                                                ggcggcACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCctgctgag                                                                                      >  1:43590/1‑136 (MQ=255)                                                                                                                                                                                                ggCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACt                                                                                                                                                                                    <  1:372568/44‑1 (MQ=255)                                                                                                                                                                                                ggCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACt                                                                                                                                                                                    >  2:372567/1‑44 (MQ=255)                                                                                                                                                                                                ggCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCa                                   >  2:652813/1‑189 (MQ=255)                                                                                                                                                                                                   tgtgcaGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACCGCTCTGAACGCCTGTGCCAAGCCCGCGGGAGCGGACGTGACcgcg                                                                                                                                  <  2:24304‑M1/85‑1 (MQ=255)                                                                                                                                                                                                   agcaCGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCa  >  1:224498/1‑219 (MQ=255)                                                                                                                                                                                                         GCCCATTCGCGGGCACGCCCGCTCCCACAGGGACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCAGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAg                                                                             <  1:246850‑M1/138‑1 (MQ=255)                                                                                                                                                                                                         |                                                                                                                                                                                                                     CCGACGGCGCCCAGACGGTTCATCATCTGCGCCTGGCAATCGGCGTCGACGGGGGTGACCGAGGGGCGACGGATCAGGTCGCAGGCCAGTTGAAGGGTAGGCGAGAGCTCGGCAGGGGCCGTCATGGGGGACTCCGGGGCAAGGCAAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCA  >  AE015451/1730963‑1731375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.