New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2472115	41 (1.030)	11 (0.290)	10/322	NT	24.1%	intergenic (+19/+130)	PP_2166/PP_2167	Anti‑anti‑sigma factor/putative PhoD‑like phosphatase
	?	AE015451	2472313 =	30 (0.780)					coding (1783/1851 nt)	PP_2167	putative PhoD‑like phosphatase

CAGTCGATGGGCTTCGATCAGGTGTTCAACATCGTCGATCGACCGATACCCTGCACCGATTGCCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCC  >  AE015451/2471893‑2472345                                                                                                                                                                                                                                |                                                                                                                                                                                                                                       cAGTCGATGGGCTTCGATCAGGTGTTCAACATCGTCGATCGACCGATACCCTGCACCGATTGCCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTaa                                                                                                                                                                                                                           >  1:403200/1‑236 (MQ=255)                 aTCAGGTGTTCAACATCGTCGATCGACCGATACCCTGCACCGATTGCCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTacgacg                                                                                                                                                                                                           >  1:283038/1‑236 (MQ=255)                      gtgtTCAACATCGTCGATCGACCGATACCCTGCACCGATTGCCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGc                                                                                                                                                                                                         <  2:283037/233‑1 (MQ=255)                          tCAACATCGTCGATCGACCGATACCCTGCACCGATTGCCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTgcg                                                                                                                                                                                                    <  1:222898/234‑1 (MQ=255)                                    cgatcgaCCGATACCCTGCACCGATTGCCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTaa                                                                                                                                                                                                                           <  2:351223/201‑1 (MQ=255)                                    cgatcgaCCGATACCCTGCACCGATTGCCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTaa                                                                                                                                                                                                                           >  1:351224/1‑201 (MQ=255)                                      agcgaCCGCTACCCTGAACCGATTGCCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTg                                                                                                                                                                                                      <  1:103121/218‑1 (MQ=255)                                                             ggCCTGACCGACTTGCCGTAGCAGGACGAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCGCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCctct                                                                                                                                                                                                                                     <  2:55787/165‑1 (MQ=255)                                                              gCCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTcgcg                                                                                                                                                                                                                                >  2:23041/1‑170 (MQ=255)                                                              gCCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTc                                                                                                                                                                                                                                   >  2:546198/1‑167 (MQ=255)                                                              gCCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAAtgtgt                                                                                                                                                                                   >  1:81474/1‑215 (MQ=255)                                                              gCCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAAtgtgt                                                                                                                                                                                   <  2:81474/215‑1 (MQ=255)                                                               ccTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAAtgt                                                                                                                                                                                     >  1:300655/1‑212 (MQ=255)                                                                gtgACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgttccc                                                                                                                                                                               <  1:118886‑M1/216‑58 (MQ=255)                                                                   aCCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGATCCCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTgcg                                                                                                                                                                                                    <  2:38557/194‑1 (MQ=255)                                                                      gACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgttccccggccttgctgtggctgggcgtacg                                                                                                                                                      >  1:324800‑M1/1‑154 (MQ=255)                                                                      gACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTc                                                                                                                                                                                                                   >  2:649341/1‑175 (MQ=255)                                                                        cTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgttccccggccttgctg                                                                                                                                                                    <  1:488436‑M1/220‑69 (MQ=255)                                                                           gCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgttccccggccttgctgtggctgggcgtacgcggc                                                                                                                                                  <  1:114301‑M1/235‑87 (MQ=255)                                                                                      aCCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAAtgtgt                                                                                                                                                                                   <  1:9207/191‑1 (MQ=255)                                                                                                  aTGTGGTGCGCTCCCAGGTGCTGGAGGCGCACAAGCT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCt                                                                                                                                                                                                                    <  2:377214/146‑1 (MQ=255)                                                                                                   tgtgGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAac                                                                                                                                                                                             >  2:347491/1‑168 (MQ=255)                                                                                                   tgtgGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAac                                                                                                                                                                                             <  1:347492/168‑1 (MQ=255)                                                                                                     gggtgCGCTCCACGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGt                                                                                                                        <  1:71830/234‑1 (MQ=255)                                                                                                        tgCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgttccccggccttgctgtggctgggcgtacgcggcaccacctccatttctcggcgcttggtaaac                                                                                                                    >  1:507847‑M1/1‑120 (MQ=255)                                                                                                             tCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGcc                                                                                                                                                                                                        >  1:567283/1‑147 (MQ=255)                                                                                                                    tGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCACCCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAAt                                                                                                                                                                      <  1:19022/174‑1 (MQ=255)                                                                                                                      cTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAAtgtgt                                                                                                                                                                                   <  1:2658/159‑1 (MQ=255)                                                                                                                         gAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgttccccggccttgctgtggctgggcgtacgcggcacca                                                                                                                                              >  1:231865‑M1/1‑103 (MQ=255)                                                                                                                          aGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCaaa                                                                                                                                                                                              <  2:556377/144‑1 (MQ=255)                                                                                                                                 caAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgttccccggccttgctgtggctgggcgtacgcggcaccacctccatttctcggcgcttggtaaaccagttgagcggcgagcgcggtgca                                                                                            >  1:265206‑M1/1‑95 (MQ=255)                                                                                                                                 caAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAAtg                                                                                                                                                                                      >  2:750155/1‑145 (MQ=255)                                                                                                                                 caAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGGTTACCCGCGACGAGGCCGGCACAGGCTGTACAAACTCTGACTCTCAcaa                                                                                                    >  1:74280/1‑225 (MQ=255)                                                                                                                                         cTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAAc                                                                                    <  1:538780/236‑1 (MQ=255)                                                                                                                                              gggCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgttccccggccttgctgtggctgggcgtacgcggcaccacctccatttctcggcgcttggtaaaccagttgagcggcgagc                                                                                                    <  1:14272‑M1/215‑133 (MQ=255)                                                                                                                                              gggCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGTCAAACCCGCTCCTACGACGTCCTGCGCCCAAACACCAATGTGTGTCCAcccccca                                                                                                                                                                       >  1:119602/1‑146 (MQ=255)                                                                                                                                                      aTGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGtt                                                                                           >  2:538779/1‑216 (MQ=255)                                                                                                                                                        gACTCCACCGGTGAAGCCTTCCATGATCTGATCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCTTCTTCGCTGGTAAACCCGCTCCTa                                                                                                                                                                                                                <  2:406521/97‑1 (MQ=255)                                                                                                                                                        gACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCAccc                                                                     >  1:650061/1‑236 (MQ=255)                                                                                                                                                             cAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgttccccggccttgctgtggctgggcgtacgcggcaccacctccatttctcggcgcttggtaaaccagttgagcggcgagcgcggtgcatacaaccagcgggtgagccggtcgagc                                                                 >  1:248120‑M1/1‑68 (MQ=255)                                                                                                                                                             cAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTa                                                                                                    >  1:94922/1‑200 (MQ=255)                                                                                                                                                                  gcgcAGCCTTCCATGATCTGGTCAATGCGCTGGGGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCAt                                                           <  1:539183/236‑1 (MQ=255)                                                                                                                                                                  gcgAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGTTACACCCGCTCCTACGACGGCCTGCGCCCAAACCCCAATGTGTGTCCACCCCCAATCAggc                                                                                                                                                                 >  2:130937/1‑133 (MQ=255)                                                                                                                                                                  gcgAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCg                                                                                              >  1:467883/1‑201 (MQ=255)                                                                                                                                                                     aaGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGCTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCACTCCGGTGTAGGAGCGGGTTTCCCCGCGAAGAGGCCGGCACAGGCTGt                                                                                                                        <  1:734284/172‑1 (MQ=255)                                                                                                                                                                      aGCCTTCCATAATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTaaaa                                                                                                                    >  2:527900/1‑175 (MQ=255)                                                                                                                                                                      aGCCTTCCATAATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTaaaa                                                                                                                    <  1:527901/175‑1 (MQ=255)                                                                                                                                                                          ttCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCg                                                                  <  2:636081/221‑1 (MQ=255)                                                                                                                                                                                        cAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAActct                                                                                                               >  2:708997/1‑162 (MQ=255)                                                                                                                                                                                          aggcgcTGGAGCGGAGCTGAGCTATCGCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCAcccc                                                                                                                                                                          <  2:2358/99‑1 (MQ=25)                                                                                                                                                                                               cTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCGGTAAAAActcc                                                                                                               >  2:750788/1‑154 (MQ=255)                                                                                                                                                                                                             aTCTATAGCCTGTGCCGGCCgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgttccccggccttgctgtggctgggcgtacgcggcaccacctccatttctcggcgcttggtaaaccagttgagcggcgagcgcggtgcatacaaccagcggttgagccggtcgagcacatccagcaagcgccgggggaactcgttcttgattccgctgctggtc                 <  1:371250‑M1/235‑216 (MQ=255)                                                                                                                                                                                                                    gCCTGTGCCGGCCgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgttccccggccttgctgtggctgggcgtacgcggcaccacctccatttctcggcgcttggtaaaccagttgagcggcgagc                                                                                                    <  2:154092‑M1/145‑133 (MQ=255)                                                                                                                                                                                                                     ccTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCGACGACGGCCTGCGCCCAAACACCACTGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGt         <  1:23041/235‑1 (MQ=255)                                                                                                                                                                                                                           ccggccgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgttccccggccttgctgtggctgggcgtacgcggcaccacctccatttctcggcgcttggtaaaccagttgagcggcgagcgcggtgcatacaaccagcggttgagccggtcgagcacatccagcaagcgccgggggaactcgttcttgattccgctgctggtcacctgccacaagtgc  >  1:474072‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                            cggccgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgttccccggccttgctgtggctgggcgtacgcggcaccacctccatttctcggcgcttggtaaaccagttgagcggcgagcgcggtgcatacaaccagcggttgagccggtcgagcacatccagcaagcgccgggggaactcgttcttgattccgctgctggtcacctgccacaa      >  2:367297‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                            cggccgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgtt                                                                                                                                                                                  <  1:687057‑M1/59‑55 (MQ=255)                                                                                                                                                                                                                            cggccgcccctgttcatcaaaaaacacctgtcccagcccggcaccattccacagccgtt                                                                                                                                                                                  >  2:687056‑M1/1‑5 (MQ=255)                                                                                                                                                                                                                            cGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTAAGCACGGGTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTg                                                    >  1:179378/1‑185 (MQ=255)                                                                                                                                                                                                                                |                                                                                                                                                                                                                                       CAGTCGATGGGCTTCGATCAGGTGTTCAACATCGTCGATCGACCGATACCCTGCACCGATTGCCTGACCGACTTGCCGTCGCAGGACCAGAATGAAGATGTGGTGCGCTCCAAGGTGCTGGAGGCGCACAAGAT‑CCTCATGGGCCTGAATGACTCCAACCGCGAAGCCTTCCATGATCTGGTCAATGCGCTGGAGCGGAGCTGATCTATAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACGACGGCCTGCGCCCAAACACCAATGTGTGTCCACCCCCAATCAGGTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTGTAAAAACTCTGAATCTCACTACGCCCGGTTTTTAAACTCTGTAGCCTCACCCCCGCCAGCATCCAGCTGGTACACCCGCGCCGGCCGCCCCTGTTCATCAAAAAACACCTGTCCCAGCC  >  AE015451/2471893‑2472345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.