New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3409687 =	23 (0.580)	3 (0.080)	3/308	NT	12.2%	intergenic (‑253/‑283)	PP_3022/PP_3024	Transcriptional regulator, AraC family/conserved protein of unknown function
	?	AE015451	3409701 =	22 (0.600)					intergenic (‑267/‑269)	PP_3022/PP_3024	Transcriptional regulator, AraC family/conserved protein of unknown function

GTAACAGGTACCGTGAACCCGTACAGTTTTTATCGCTGGCTGTTACTTGACCGCAGGGCCCGGAACCCACCGAAATAGAGGGCTGTTGTCAGAGGAAACGAGAATGGACCTTTCAAGCCTGCTGCTTTTCATCCCTGCCTGCTTCGCCTTGAACATGGCGCCAGGGCCTAACAACCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGG  >  AE015451/3409462‑3409884                                                                                                                                                                                                                                  |                                                                                                                                                                                                      gTAACAGGTACCGTGAACCCGTACAGTTTTTATCGCTGGCTGTTACTTGACCGCAGGGCCCGGAACCCACCGAAATAGAGGGCTGTTGTCAGAGGAAACGAGAATGGACCTTTCAAGCCTGCTGCTTTTCATCCCTGCCTGCTTCGCCTTGAACATGGCGCCAGGGCCTAACAACCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGgccggcgccg                                                                                                                                                                                             <  1:279416/236‑1 (MQ=255)            cGTGAACCCGTACAGTTTTTATCGCTGGCTGTTACTTGACCGCAGGGCCCGGAACCCACCGAAATAGAGGGCTGTTGTCAGAGGAAACGAGAATGGACCTTTCAAGCCTGCTGCTTTTCATCCCTGCCTGCTTCGCCTTGAACATGGCGCCAGGGCCTAACAACCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCtt                                                                                                                                                                                  <  1:443617/236‑1 (MQ=255)                         aGTTTTTATCGCTGGCTGTTACTTGACCGCAGGGCCCGGAACCCACCGAAATAGAGGGCTGTTGTCAGAGGAAACGAGAATGGACCTTTCAAGCCTGCTGCTTTTCATCCCTGCCTGCTTCGCCTTGAACATGGCGCCAGGGCCTAACAACCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTAAcc                                                                                                                                                                                    >  1:286212/1‑221 (MQ=255)                                      ggctgTTACTTGACCGCAGGGCCCGGAACCCACCGAAATAGAGGGCTGTTGTCAGAGGAAACGAGAATGGACCTTTCAAGCCTGCTGCTTTTCATCCCTGCCTGCTTCGCCTTGAACATGGCGCCAGGGCCTAACAACCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTgg                                                                                                                                                         >  1:504250/1‑235 (MQ=255)                                        ctgTTACTTGACCGCAGGGCCCGGAACCCACCGAAATAGAGGGCTGTTGTCAGAGGAAACGAGAATGGACCTTTCAAGCCTGCTGCTTTTCATCCCTGCCTGCTTCGCCTTGAACATGGCGCCAGGGCCTAACAACCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGcc                                                                                                                                                       >  1:708354/1‑234 (MQ=255)                                                      cAGGGCCCGGAACCCACCGAAATAGAGGGCTGTTGTCAGAGGAAACGAGAATGGACCTTTCAAGCCTGCTGCTTTTCATCCCTGCCTGCTTCGCCTTGAACATGGCGCCAGGGCCTAACAACCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCa                                                                                                                                        >  1:439902/1‑236 (MQ=255)                                                                             agagGGCTGTTGTCAGAGGAAACGAGAATGGACCTTTCAAGCCTGCTGCTTTTCATCCCTGCCTGCTTCGCCTTGAACATGGCGCCAGGGCCTAACAACCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGAt                                                                                                                                                  <  2:439119/203‑1 (MQ=255)                                                                                                       aaTGGACCTTTCAAGCCTGCTGCTTTTCATCCCTGCCTGCTTCGCCTTGAACATGGCGCCAGGGCCTAACAACCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCt                                                                                                                                                           <  2:503050/168‑1 (MQ=255)                                                                                                       aaTGGACCTTTCAAGCCTGCTGCTTTTCATCCCTGCCTGCTTCGCCTTGAACATGGCGCCAGGGCCTAACAACCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGgtggtg                                                                                        <  1:278635/235‑1 (MQ=255)                                                                                                                  cAAGCCTGCTGCTTTTCATCCCTGCCTGCTTCGCCTTGAACATGGCGCCAGGGCCTAACAACCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGtggtgg                                                                                       <  1:273733/225‑1 (MQ=255)                                                                                                                   aaGCCTGCTGCTTTTCATCCCTGCCTGCTTCGCCTTGAACATGGCGCCAGGGCCTAACAACCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCcgcgg                                                                                                                                                   >  2:70311/1‑163 (MQ=255)                                                                                                                        gccgcgccccccaccttgatggccaggaataggtattcgctggtatgcaacaccactgccaggcccatcgctgccagggcgatcatgccgcagaaggcaaggatacGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGc                                                                                                                                                     >  2:589950‑M1/107‑157 (MQ=255)                                                                                                                                     cccTGCCTGCTTCGCCTTGAACATGGCGCCAGGGCCGAACAACCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATg                                                                                                                                                 <  1:15869/148‑1 (MQ=255)                                                                                                                                                       gAACATGGCGCCAGGGCCTAACAACCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCa                                                                                                                                                       >  2:462533/1‑124 (MQ=255)                                                                                                                                                           aTGGCGCCAGGGCCTAACACCCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGt                                      <  2:265509/233‑1 (MQ=255)                                                                                                                                                              gcgcCAGGGCCTAACAACCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGcc                                                                               <  1:312284/189‑1 (MQ=255)                                                                                                                                                                     ggCCTAACAACCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGtggtgg                                                                                       <  2:428461/174‑1 (MQ=255)                                                                                                                                                                     ggCCTAACAACCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGtggtgg                                                                                       >  1:428462/1‑174 (MQ=255)                                                                                                                                                                      gcaacaccactgccaggcccatcgctgccagggcgatcatgccgcagaaggcaacgctacGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATggg                                                                                                                                               <  1:554967‑M1/57‑1 (MQ=255)                                                                                                                                                                             cactgccaggcccatcgctgccagggcgatcatgccgcagaaggcaaggatacGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGaa                                                                                                                   <  2:691530‑M1/85‑1 (MQ=255)                                                                                                                                                                              cccTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGcc                                                                               <  1:625973/172‑1 (MQ=255)                                                                                                                                                                                  ccaggcccatcgctgccagggcgatcatgccgcagaaggcaaggatacggccgg                                                                                                                                                                                                  >  2:298479‑M1/49‑54 (MQ=255)                                                                                                                                                                                   ttgtCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCAt                                                                                                                                                                    <  1:45316/83‑1 (MQ=255)                                                                                                                                                                                                ccgcccgccGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAg                                                                                                                                                      <  2:173536/83‑1 (MQ=255)                                                                                                                                                                                                aCGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAggcgg  >  2:608212/1‑232 (MQ=255)                                                                                                                                                                                                 cGCCAGCCGTTACGGCCTGCGCCCCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAg                                                                                                                       <  1:198888/114‑1 (MQ=255)                                                                                                                                                                                                                       aCCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCg                           >  2:265161/1‑184 (MQ=255)                                                                                                                                                                                                                             tGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACCTCTCCTGGCAACTGGGgcgcggcccc                                        >  2:203509/1‑160 (MQ=255)                                                                                                                                                                                                                             tGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGc                                  >  1:579823/1‑171 (MQ=255)                                                                                                                                                                                                                                  |                                                                                                                                                                                                      GTAACAGGTACCGTGAACCCGTACAGTTTTTATCGCTGGCTGTTACTTGACCGCAGGGCCCGGAACCCACCGAAATAGAGGGCTGTTGTCAGAGGAAACGAGAATGGACCTTTCAAGCCTGCTGCTTTTCATCCCTGCCTGCTTCGCCTTGAACATGGCGCCAGGGCCTAACAACCTGTTGTCACTGCACAACGCCAGCCGTTACGGCCTGCGCACCGCCTGCGTGGCCGGCGCCGGCCGTATCCTTGCCTTCTGCGGCATGATCGCCCTGGCAGCGATGGGCCTGGCAGTGGTGTTGCATACCAGCGAATACCTATTCCTGGCCATCAAGGTGGTGGGCGCGGCCTACCTGTTCTACATCGCCTGGCAACTGTGGCGCGCACCCGTGAGCGAGACCGTGGTGGCAAGCGATCACCCAGGCGG  >  AE015451/3409462‑3409884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.