New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3855028 =	36 (0.900)	4 (0.110)	4/320	NT	10.1%	coding (175/888 nt)	PP_3403	putative Quercetin 2,3‑dioxygenase
	?	AE015451	3855078 =	37 (0.970)					coding (125/888 nt)	PP_3403	putative Quercetin 2,3‑dioxygenase

CACGCTTGTCCCGCGCCGGCAGGTTCACCCACAGCTGGACCATTTCCAGCGTGCCGCCACTGCGTGCAAAGTCGGGGGAATGAAACTCCTCATGAATGATGCCGTTGGCCGCCGTCATCCACTGCACGTCACCTGGACCGATCAACCCGCCAGCACCGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCTGCGCACCGGGAAACCATCACCCACCCAATGGGCGTGGGGGCTGCGGTGAATACCCAGAATCGTTTTCATGAGAAGGCTCCTCACTTGGTT  >  AE015451/3854797‑3855223                                                                                                                                                                                                                                        |                                                                                                                                                                                                    gcagggttgactgttctgcaggtgggacgatgcatgccatttcagccgtctaccgcttgattggcatcattgataaggttacctcaaccaagtgaggagccttctcatgaaaacgattctgggtattcaccgcagcccccacgcccattgggtgggtgatggtttcccggtgcgcagcctgttcacctacgacaacctggccagccagatcagcccgttcctgctgctggaCTAcg                                                                                                                                                                                                 >  1:3041‑M1/232‑236 (MQ=255)            cgcgCCGGCAGGTTCACCCACAGCTGGACCATTTCCAGCGTGCCGCCACTGCGTGCAAAGTCGGGGGAATGAAACTCCTCATGAATGATGCCGCTGGCCGCCGTCATCCACTGCACGTCACCTGGACCGATCAACCCGCCAGCACCGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGcgtcgt                                                                                                                                                                                        >  2:584914/1‑234 (MQ=255)                   gCAGGTTCACCCACAGCTGGACCATTTCCAGCGTGCCGCCACTGCGTGCAAAGTCGGGGGAATGAAACTCCTCATGAATGATGCCGTTGGCCGCCGTCATCCACTGCACGTCACCTGGACCGATCAACCCGCCAGCACCGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCtcgggt                                                                                                                                                                                >  1:438016/1‑235 (MQ=255)                                         cATTTCCAGCGTGCCGCCACTGCGTGCAAAGTCGGGGGAATGAAACTCCTCATGAATGATGCCGTTGGCCGCCGTCATCCACTGCACGTCACCTGGACCGATCAACCCGCCAGCACCGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCg                                                                                                                                                          <  1:745717/235‑1 (MQ=255)                                                                 tGCAAAGTCGGGGGAATGAAACTCCTCATGAATGATGCCGTTGGCCGCCGTCATCCACTGCACGTCACCTGGACCGATCAACCCGCCAGCACCGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACggg                                                                                                                                  >  1:48220/1‑235 (MQ=255)                                                                      aGTCGGGGGAATGAACCTCCTCATGAATGATGCCGTTGGCCGCCGTCATCCACTGCACGTCACCTGGACCGATCAACCCGCCAGCACCGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATc                                                                                                                            <  1:54571/236‑1 (MQ=255)                                                                                aTGAAACTCCTCATGAATGATGCCGTTGGCCGCCGTCATCCACTGCACGTCACCTGGACCGATCAACCCGCCAGCACCGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGcc                                                                                                                   <  1:345883/235‑1 (MQ=255)                                                                                                            gccgccGTCATCCACTGCACGTCACCTGGACCGATCAACCCGCCAGCACCGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTc                                                                                                           <  2:438015/215‑1 (MQ=255)                                                                                                                              aCGTCACCTGGACCGATCAACCCGCCAGCACCGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAAc                                                                                                 >  1:396879/1‑207 (MQ=255)                                                                                                                                gTCACCTGGACCGATCAACCCGCCAGCACCGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATctggct                                                                                                                       <  2:269478/183‑1 (MQ=255)                                                                                                                                   aCCTGGACCGAGCAACCCGCCAGCACCGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGCTCACGGTCTCGAAGCCGCGATTCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCcagcagca                                                                                                                                          <  1:408419/161‑1 (MQ=255)                                                                                                                                               cAACCCGCCAGCACCGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGCTGCGGATTCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGaaa                                                                                                                                                                      >  2:59492/1‑121 (MQ=255)                                                                                                                                                agcccGCCAGCACCGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCGCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATc                                                                                                                                                                    <  2:238096/120‑1 (MQ=255)                                                                                                                                                aaCCCGCCAGCACCGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACa                                                                                                >  1:434889/1‑190 (MQ=255)                                                                                                                                                aaCCCGCCAGCACCGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCTGCGCACCGGGAAACCATCACCCACCCAATGGGCGTgggg                                                     >  2:261248/1‑233 (MQ=255)                                                                                                                                                   ccGCCAGCACCGGTGGAGTCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCTGCGCACCg                                                                                    <  1:494763/199‑1 (MQ=255)                                                                                                                                                    cGCCAGCGCCGGGGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATc                                                                                                                                                                    <  2:118155/118‑1 (MQ=255)                                                                                                                                                     tgggtgggtgatggtttcccggtgcgcagcctgttcacctacgacaacctggccagccagatcagcccgttcctgctgctggaCTACGCCGCGTCGTGCTCGGGTCGGGGTGAACGCATGCGGACCGGAGTAGTCCAGCAGCAGAAACGGGCTGAt                                                                                                                             <  1:45601‑M1/73‑1 (MQ=255)                                                                                                                                                       cAGCACCGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCTGCGCACCGGGAAACCATCACCCACCCAATGGGCGTGGGGGCTGCGGTg                                            <  1:596696/235‑1 (MQ=255)                                                                                                                                                             cGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATctggct                                                                                                                       >  1:565070/1‑154 (MQ=255)                                                                                                                                                             cGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATctggct                                                                                                                       <  2:565069/154‑1 (MQ=255)                                                                                                                                                               gTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCTGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCTg                                                                                           >  1:713926/1‑180 (MQ=255)                                                                                                                                                                tggtttcccggtgcgcagcctgttcacctacgacaacctggccagccagatcagcccgtgcctgctgctggaCTACGCCGCGTCGTGCTCGGGTCGGGGTGACATCATGCGgacgg                                                                                                                                                          <  2:549145‑M1/44‑3 (MQ=255)                                                                                                                                                                          gTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATctggctg                                                                                                                      >  2:567966/1‑142 (MQ=255)                                                                                                                                                                          gTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATctggctg                                                                                                                      <  1:567967/142‑1 (MQ=255)                                                                                                                                                                                cAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCTGCGCACCGGGAAACCATc                                                                          >  2:712482/1‑180 (MQ=255)                                                                                                                                                                                cAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCTGCGCACCGGGAAACCATc                                                                          <  1:712483/180‑1 (MQ=255)                                                                                                                                                                                     ccgcTTGGTAGACGATGGTCACGGTCCCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCTgc                                                                                          <  2:211850/156‑1 (MQ=255)                                                                                                                                                                                     cACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCTGCGCACCGGGAAACCATCACCCACCCAATGGGCGTGGGGGCTGCGGTGAATACCCAGAATCGTTTTCATGAGAAgg                >  2:572750/1‑233 (MQ=255)                                                                                                                                                                                      aCCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCTGCGCACCGGGAAACCATCACCCACCCAATGGGCGTGGGGGCTGCGGTGAATACCCAGAATCGTTTTCATGAGAAGGctc             >  1:195427/1‑235 (MQ=255)                                                                                                                                                                                          cctacgacaacctggccagccagatcagcccgttcctgctgctggaCTACGCAGCCTCGTGCTCGGGACGGGGCGAAATCATGCGGACCGACGTTGTCCAGCCACAGCAACGGGGTGa                                                                                                                              <  2:361876‑M1/72‑1 (MQ=255)                                                                                                                                                                                                aCGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCTGCGCACCGGGAAACCATCACCCACCCAATGGGCGTGGGGGCTGCGGTGAATACCCAGAATCGTTTTCATGAGAAGGCTCCTCACTTGGtt  <  1:19922/236‑1 (MQ=255)                                                                                                                                                                                                  accctggccagccagatcagcccgttcctgctgctggcCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAAc                                                                                                                                     >  2:131549‑M1/39‑103 (MQ=255)                                                                                                                                                                                                   aTGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCTGCGCACCGGGAAACCATCACCCACCCAATGGGCGTGGGGGCTGCGGTGAATAcc                                      >  2:539829/1‑197 (MQ=255)                                                                                                                                                                                                        cACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAg                                                                                               >  1:112694/1‑135 (MQ=255)                                                                                                                                                                                                         aCGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGcgtc                                                                                                                                                                                          >  2:745969/1‑43 (MQ=255)                                                                                                                                                                                                           ggTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCTGCGCACCGGGAAACCATCACCCACCCAATGGGCGTGGGGGCTGCGGTGAATACCCAGAATCGTTTTCATGAGAAGGctcctc          <  1:20991/217‑1 (MQ=255)                                                                                                                                                                                                                  aaGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTc                                                                                                           <  2:112694/113‑1 (MQ=255)                                                                                                                                                                                                                   aGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCTGCGCACCGGGAAACCATCACCCACCCAATGGGCGTGGGGGCTGCGGTGAATACCCAGAATCGtt                            >  2:424825/1‑191 (MQ=255)                                                                                                                                                                                                                     ccGTGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCGTGCGGACGGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCTGCGCACCGGGAAACCATcac                                                                        <  2:20735/145‑1 (MQ=255)                                                                                                                                                                                                                        cgATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCTGCGCACCGGGAAACCATCACCCACCCAATGGGCGTGGGGGCTGCGGTGAATAc                                       <  2:386242/175‑1 (MQ=255)                                                                                                                                                                                                                                        CTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCt                                                                                            <  2:162929‑M1/106‑1 (MQ=255)                                                                                                                                                                                                                                        CTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCt                                                                                            >  1:162929‑M1/1‑106 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                    CACGCTTGTCCCGCGCCGGCAGGTTCACCCACAGCTGGACCATTTCCAGCGTGCCGCCACTGCGTGCAAAGTCGGGGGAATGAAACTCCTCATGAATGATGCCGTTGGCCGCCGTCATCCACTGCACGTCACCTGGACCGATCAACCCGCCAGCACCGGTGGAATCACGGTGCTCCAGTTCACCTTGGTAGACGATGGTCACGGTCTCGAAGCCGCGATGCGGATGCTGGCCTACGCCGCGTCGTGCTCGGGTCGGGGTGAAATCATGCGGACCGGCGTAGTCCAGCAGCAGGAACGGGCTGATCTGGCTGGCCAGGTTGTCGTAGGTGAACAGGCTGCGCACCGGGAAACCATCACCCACCCAATGGGCGTGGGGGCTGCGGTGAATACCCAGAATCGTTTTCATGAGAAGGCTCCTCACTTGGTT  >  AE015451/3854797‑3855223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.