New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3981024	32 (0.800)	4 (0.110)	4/320	NT	11.0%	coding (678/1068 nt)	cobW	Protein CobW
	?	AE015451	= 3981044	34 (0.890)					coding (658/1068 nt)	cobW	Protein CobW

CGGCTTGCCCGGGATGGCGGCGAAGCCTTTGGCGCGCAGGATACCGAACTCCACCACCAACTGGGTCAATGCATCGAGCAGCAGGCTTTCGTCGGCTTCAGGCAGGTCGATGGAGATGGAGTCGAAAGCGTCGTGGTCATGATCGTCATGATCGTCGCCATCGTGGTGCGAATCGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCAGCGAACAGCTCGTGCAGGGGCGATTCATGGTCCAGGTTAGGGTCGAGCTTGCGCTGGGCATCGACCTGGTCCGGGTAGGCG  >  AE015451/3980793‑3981258                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           cGGCTTGCCCGGGATGGCGGCGAAGCCTTTGGCGCGCAGGATACCGAACTCCACCACCAACTGGGTCAATGCATCGAGCAGCAGGCTTTCGTCGGCTTCAGGCAGGTCGATGGAGATGGAGTCGAAAGCGTCGTGGTCATGATCGTCATGATCGTCGCCATCGTGGTGCGAATCGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGAACCt                                                                                                                                                                                                                                        >  1:634484/1‑236 (MQ=255)                                                     accaccaACTGGGTCAATGCATCGAGCAGCAGGCTTTCGTCGGCTTCAGGCAGGTCGATGGAGATGGAGTCGAAAGCGTCGTGGTCATGATCGTCATGATCGTCGCCATCGTGGTGCGAATCGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCa                                                                                                                                                                                     >  1:102378/1‑235 (MQ=255)                                                             cTGGGTCAATGCATCGAGCAGCAGGCTTTCGTCGGCTTCAGGCAGGTCGATGGAGATGGAGTCGAAAGCGTCGTGGTCATGATCGTCATGATCGTCGCCATCGTGGTGCGAATCGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCAcc                                                                                                                                                                                               <  1:514397/217‑1 (MQ=255)                                                                              gcagcaGGCTTTCGTCGGATTCAGGCAGGTCGATGGAGATGGAGTCGAAAGCGTCGTGGTCATGATCGTCATGATCGTCGCCATCGTGGTGCGAATCGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGcc                                                                                                                                                                                                              <  1:253096/185‑1 (MQ=255)                                                                               cagcagGCTTTCGTCGGCTTCAGGCAGGTCGATGGAGATGGAGTCGAAAGCGTCGTGGTCATGATCGTCATGATCGTCGCCATCGTGGTGCGAATCGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGgcacgcac                                                                                                                                                            >  2:276389/1‑234 (MQ=255)                                                                                  cagGCTTTCGTCGGCTTCAGGCAGGTCGATGGAGATGGAGTCGAAAGCGTCGTGGTCATGATCGTCATGATCGTCGCCATCGTGGTGCGAATCGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCggcaag                                                                                                                                                                                                                                      <  2:527063‑M1/157‑7 (MQ=255)                                                                                                             gatggagatggaGTCGAAAGCGTCGTGGTCATGATCGTCATGATCGTCGCCATCGTGGTGCGAATCGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCg                                                                                                                             <  1:510471/235‑1 (MQ=255)                                                                                                                ggagatggagTCGAAAGCGTCGTGGTCATGATCGTCATGATCGTCGCCATCGTGGTGCGAATCGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGcc                                                                                                                          <  1:274219/235‑1 (MQ=255)                                                                                                                       gagTCGAAAGCGTCGTGGTCATGATCGTCATGATCGTCGCCATCGTGGTGCGAATCGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGcc                                                                                                                                                     >  1:115047/1‑201 (MQ=255)                                                                                                                        agTCGAAAGCGTCGTGGTCATGATCGTCATGATCGTCGCCATCGTGGTGCGAATCGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCg                                                                                                                             <  2:572975/224‑1 (MQ=255)                                                                                                                                  gtcgtGGTCATGATCGTCATGATCGTCGCCATCGTGGTGCGAATCGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCg                                                                                                                                                                    <  2:739464/175‑1 (MQ=255)                                                                                                                                   tcgtGGTCATGATCGTCATGATCGTCGCCATCGTGGTGCGAATCGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGt                                                                                                       <  1:276390/235‑1 (MQ=255)                                                                                                                                       ggTCATGATCGTCATGATCGTCGCCATCGTGGTGCGAATCGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCgctgctgggcgtgggtgccgagtccgaggcgc                                                                                                                                                                                        <  2:723181‑M2/150‑33 (MQ=255)                                                                                                                                                      gatcgtcGCCATCGTGGTGCGAATCGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCa                                                                                   >  1:617679/1‑236 (MQ=255)                                                                                                                                                        gcgtcgCCATCGTGGTGCGAATCGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCCCCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGgc                                                                                                                                                                  <  2:115047/154‑1 (MQ=255)                                                                                                                                                                           aaTCGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCAGc                                                                                 <  2:303623/217‑1 (MQ=255)                                                                                                                                                                             tCGTGGTGGGTCCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCAGCGAAc                                                                             <  1:472684/219‑1 (MQ=255)                                                                                                                                                                              cGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCggcaagctgccactggaggtgctgctgggcgtgggtgccgagtcagaggcgcatatcgatggccgccgaacccaccac                                                                                                                                                              >  1:723182‑M1/1‑59 (MQ=255)                                                                                                                                                                               gtggtgGGTTCGGCGGCCATCGATATGCGCCTCTGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCgctgctgggcgtgggtgccgagtccgaggcgcatatcgatggccgccgaacccaccacg                                                                                                                                                             >  1:723182‑M2/1‑78 (MQ=255)                                                                                                                                                                               gtggtgGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCAGCGAACAGCTCGTGCAGGGGCGAt                                                           >  1:594415/1‑235 (MQ=255)                                                                                                                                                                                             ggcCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCAGCGAACAGCTCGTGCAGGGGCGATTCATGGTCCa                                                 <  1:663604/231‑1 (MQ=255)                                                                                                                                                                                             ggcCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCAGCGAACAGCTCGTGCAGGGGCGATTCATGGTCCa                                                 >  2:663603/1‑231 (MQ=255)                                                                                                                                                                                                    catatGCGCCTCGGCCTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGt                                                                                                                      <  2:560106/154‑1 (MQ=255)                                                                                                                                                                                                         gcgcCTCGGACTCGGCACCCACGCCCAGCAGCggcaagctgccactggaggtgctgctgggcgtgggtgccgagtccgaggcgcatatcgatggccgccgaacccaccacgattcgcaccacgatggcgacgatcatgacgatcatgacc                                                                                                                      <  2:723181‑M1/150‑119 (MQ=255)                                                                                                                                                                                                               cGGACTCGGCACCCACGCCCAGCAGCggcaagctgccactggaggtgctgctggg                                                                                                                                                                                                               >  1:555552‑M1/1‑26 (MQ=255)                                                                                                                                                                                                               cGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGGCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCAGCGAACAGCTCGTGCAg                                                                  <  1:42957/196‑1 (MQ=255)                                                                                                                                                                                                                ggACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCAGCGAAc                                                                             >  1:4455/1‑184 (MQ=255)                                                                                                                                                                                                                ggACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCAGCGAACCGCTCGTGCAGGGGCGATTCATGGTCCAGGTTAGGGTCGAGCTTGCGCTg                           >  1:355104/1‑234 (MQ=255)                                                                                                                                                                                                                  aCTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCg                                                                                                                                            >  1:229907/1‑119 (MQ=255)                                                                                                                                                                                                                  aCTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCAGCGAACAGCTCGGGCAGGGGCGATTCATGGTCCAGGt                                              >  1:182824/1‑213 (MQ=255)                                                                                                                                                                                                                   cTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTg                                                                                       >  2:444770/1‑171 (MQ=255)                                                                                                                                                                                                                         aCCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCAGCGAACAGCTCGTGCAGGGGCGATTCATGGTCCAGGTTAGGGTCGAGCTTGCGCTGGGCATCGACCt                <  1:444771/236‑1 (MQ=255)                                                                                                                                                                                                                          cccACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCCGCTGGTCAGCGAACAGCTCGTGCAGGGGCGCTTCATGGTCCAgga                                              >  1:193974/1‑204 (MQ=255)                                                                                                                                                                                                                                cccAGCAGCACCTCCAGTGGCAGCTTGCCgctgctgggcgtgggtgccgagtccg                                                                                                                                                                                              >  1:555552‑M2/1‑29 (MQ=255)                                                                                                                                                                                                                                cccAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCCGGTCGGCGCTGGCCAGCTGGt                                                                                     >  2:32857/1‑160 (MQ=255)                                                                                                                                                                                                                                cccAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCAGCGAACAGCTCGTGCAGGGGCGATTCATGGTCCAGGTTAGGGTCGAGCTTGCGCTGGGCATCGACCTGGTCCgc         >  2:591914/1‑235 (MQ=255)                                                                                                                                                                                                                                 ccAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCCGGCCTTCGGCGTCGGTCAGGTCGGCCTTGTTCAACACCACCAGGTCGgcg                                                                                                  >  2:203279/1‑146 (MQ=255)                                                                                                                                                                                                                                 ccAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCAGCGAACAGCTCGTGCAGGGGCGATTCATGGTCCAGGTTCGGGTCGAGCTTGCGCTGGGCATCGACCTGGTCCgg         >  1:123062/1‑235 (MQ=255)                                                                                                                                                                                                                                 ccAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCAGCGAACAGCTCGTGCAGGGGCGATTCATGGTCCAGGTTAGGGTc                                       >  1:191114/1‑205 (MQ=255)                                                                                                                                                                                                                                   agcagcACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCAGCGAACAGCTCGTGCAGGGGCGATTCATGGTCCAGGTTAGGGTCg                                      >  2:269274/1‑204 (MQ=255)                                                                                                                                                                                                                                        caCCTCCAGTGGCGGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCAGCGAACAGCTCGTGCAGGGGCGAt                                                           <  1:48640/178‑1 (MQ=255)                                                                                                                                                                                                                                        caCCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCAGCGAACAGCTCGTGCAGGGGCGATTCATGGTCCAGGTTAGGGTCGAGCTTGCGCTGGGCATCGACCTGGTCCGGGTAggcg  >  1:68545/1‑235 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           CGGCTTGCCCGGGATGGCGGCGAAGCCTTTGGCGCGCAGGATACCGAACTCCACCACCAACTGGGTCAATGCATCGAGCAGCAGGCTTTCGTCGGCTTCAGGCAGGTCGATGGAGATGGAGTCGAAAGCGTCGTGGTCATGATCGTCATGATCGTCGCCATCGTGGTGCGAATCGTGGTGGGTTCGGCGGCCATCGATATGCGCCTCGGACTCGGCACCCACGCCCAGCAGCACCTCCAGTGGCAGCTTGCCGCTGCTGGCCTCGATCACTTTCACCGCCGGCGGCAGTTCTTCGGCCACCTCGGCACGCACCTTGGCCAGGCCTTCGGCGTCGATCAGGTCGGCCTTGTTCAACACCACCAGGTCGGCGCTGGCCAGCTGGTCAGCGAACAGCTCGTGCAGGGGCGATTCATGGTCCAGGTTAGGGTCGAGCTTGCGCTGGGCATCGACCTGGTCCGGGTAGGCG  >  AE015451/3980793‑3981258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.