New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4845609	24 (0.600)	3 (0.080)	3/320	NT	12.0%	coding (359/2475 nt)	PP_4261	cation‑transporting P‑type ATPase
	?	AE015451	4846279 =	21 (0.550)					coding (1029/2475 nt)	PP_4261	cation‑transporting P‑type ATPase

GAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTACCAGCCTGACCAGGCCGCCGAGCAATTGGCCCGGGAAAACCGCAGCGCCCTACGCCGCCTGGGCGTGGCCGGGCTGCTGTGGTTCCAGGCGATGATGGCGACCATGGC  >  AE015451/4845395‑4845840                                                                                                                                                                                                                       |                                                                                                                                                                                                                                        gAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGG                                                                                                                                                                                                                                         >  2:268498‑M1/1‑215 (MQ=255)               acacCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCAc                                                                                                                                                                                                       >  1:9276/1‑235 (MQ=255)                 acCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGc                                                                                                                                                                                                    <  1:434078/236‑1 (MQ=255)                  ccGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCAcc                                                                                                                                                                                                      >  1:714224/1‑233 (MQ=255)                  ccGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGATTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCAcc                                                                                                                                                                                                      <  2:714223/233‑1 (MQ=255)                      aGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCctgc                                                                                                                                                                                                >  1:645205/1‑235 (MQ=255)                       gCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCctgctg                                                                                                                                                                                              >  1:258991/1‑236 (MQ=255)                       gCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCctgct                                                                                                                                                                                               <  1:487288/235‑1 (MQ=255)                         gACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCctgctgct                                                                                                                                                                                            <  1:47608/236‑1 (MQ=255)                             acaGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCctgctgct                                                                                                                                                                                            <  1:392510/232‑1 (MQ=255)                             acaGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCctgctgct                                                                                                                                                                                            >  2:392509/1‑232 (MQ=255)                                                     ccAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCctgctg                                                                                                                                                                                              >  1:413315/1‑206 (MQ=255)                                                            acTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCGGTCgcgc                                                                                                                                                          >  1:561955/1‑235 (MQ=255)                                                                 aGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCg                                                                                                                                                                   >  1:640391/1‑221 (MQ=255)                                                                 aGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCCACCGccg                                                                                                                                                                >  2:414764/1‑222 (MQ=255)                                                                        aCTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAAc                                                                                                                                             >  1:525187/1‑236 (MQ=255)                                                                           ggCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACtt                                                                                                                                           >  1:730511/1‑235 (MQ=255)                                                                                     gACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCt                                                                                                                                                                                                                       >  2:136/1‑149 (MQ=255)                                                                                         gCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGa                                                                                                                                                                                          >  2:387925/1‑174 (MQ=255)                                                                                             cGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGgtgt                                                                                                                                                                                                                                      >  2:568793/1‑126 (MQ=255)                                                                                               aCGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGcgcggtcatccctgccgacgggcgcatcgtcgagggccgctccag                                                                                                                                                                                            >  2:163608‑M1/1‑121 (MQ=255)                                                                                                    cagcaAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCAccc                                                                                                                 <  1:350831/236‑1 (MQ=255)                                                                                                               cGTCCGCCGCCAGGGAGGGCTGGCCGAAACCTCCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAgcgcgc                                                                                                                                                                                                                         <  2:255294/121‑1 (MQ=255)                                                                                                                        ccaGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGCAGCGCGCCTGAACCTGTCCAATCACCGCctgctg                                                                                                                                                                                              >  2:179404/1‑139 (MQ=255)                                                                                                                                                 ttgcttgTCGAGGGCATCAGCTGGTCCGCCGGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTg                                                                                                                                                                                                                      <  2:69473/90‑1 (MQ=255)                                                                                                                                                       gTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGcgcggtcatccctgccgacgggcgcatcgtcgagggccgctccagcgtcgacgaatcgctgctgaccggcgagtatctgccgcaaccacgccgggtgggtgagcgggtcactggcggtacgctgaacgttgaaagcgcgctgaatgtggaagtggaagccctcggccatga                                                              >  1:8646‑M1/1‑65 (MQ=255)                                                                                                                                                          gAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTACCAGCCTGACCAGGCCGCCGAGCAATTGGCCCGGGAAAACCGCAg                                                                 >  1:377190/1‑230 (MQ=255)                                                                                                                                                                     cTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGcgcggtcatccctgccgacgggcgcatcgtcgagggccgctccagcgtcgacgaatcgctgctgaccggcgagtatctgccgcaaccacgccgggtgggtgagcgggtcactggcggtacgctgaacgttgaaagcgcgctgaatgtggaagtggaagc                                                                          <  1:163608‑M1/210‑160 (MQ=255)                                                                                                                                                                                              gAAAAGCACCTGCGCAACCGGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCctg                                                                                                                                                                                                 <  2:34010/66‑1 (MQ=255)                                                                                                                                                                                                                 tGCCCGGcgcggtcatccctgccgacgggcgcatcgtcgagggccgctccagcgtcgacgaatcgctgctgaccggcgagtatctgccgcaaccacgccgggtgggtgagcgggtcactggcggtacgctgaacgttgaaagcgcgctgaatgtggaagtggaagccctcggccatgactcacgcttgtcggccatcg                                          <  2:402065‑M1/198‑192 (MQ=255)                                                                                                                                                                                                                    acgGcgcggtcatccctgccgacgggcgcatcgtcgagggccgctccagcgtcgacgaatcgctgctgaccggcgagtatctgccgcacccacgccgggtgggtgagcgggtcactggcggtacgctgaacgttgaaagc                                                                                                 <  2:165651‑M1/139‑137 (MQ=255)                                                                                                                                                                                                                     cGGcgcggtcatccctgccgacgggcgcatcgtcgagggccgctccagcgtcgacgaatcgctgctgaccggcgagtatctgccgcaaccacgccgggtgggtgagcgggtcactggcggtacgctgaacgttgaaagcgcgctgaatgtggaagtggaagccctcggccatgactcccg                                                        >  2:346745‑M1/1‑3 (MQ=255)                                                                                                                                                                                                                      ggTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTACCAGCCTGACCAGGCCGCCGAGCAATTGGCCCGGGAAAACCGCAGCGCCCTACGCCGCCTGGGCGTGGCCGGGCTGCTGTGGTTCCAGGCGATGATGGCGACCATGGc  >  2:262984/1‑233 (MQ=255)                                                                                                                                                                                                                       |                                                                                                                                                                                                                                        GAACATTACTACCAACACCGCAGCGACAACAGCGCCAACCCCGAAGCCCTGCCCAAACAACTACAGGACGAACTGGCCCTGTACGACCGCAGCGACGTGCAGCAAACCTTCGTCCGCCACCAGGGTGAGCTGGCCGAAACCACCTTGCTTGTCGAGGGCATCAGCTGCGCCGCCTGCGGCTGGCTGATCGAAAAGCACCTGCGCAACCTGCCCGGTGTCGCCGAAGCGCGCCTGAACCTGTCCAATCACCGCCTGCTGCTGAACTGGGATGACAAGCAGCTACCGCTGTCGCGCCTCCTCGCCGAACTTCGCCAGATCGGCTACGCCGCCCACCCCTACCAGCCTGACCAGGCCGCCGAGCAATTGGCCCGGGAAAACCGCAGCGCCCTACGCCGCCTGGGCGTGGCCGGGCTGCTGTGGTTCCAGGCGATGATGGCGACCATGGC  >  AE015451/4845395‑4845840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.