New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5545666	NA (NA)	16 (0.410)	13/330	NT	44.9%	intergenic (‑806/+71)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine‑2'‑O‑)‑methyltransferase RlmB
	?	AE015451	5621244 =	20 (0.500)					coding (20/774 nt)	PP_4939	conserved protein of unknown function

AACGCCGATGCCATTTGGGCCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCACCGACACGTTAAGGCTGCTGACGCTACCCGCCATCGGCAACTTGACCAGGAAGTCGCAATGCTCACGGGTGAGCCGGCGCATGCCCTTGCCTTCCGCCCCCATG  >  AE015451/5545442‑5545896                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                       aaCGCCGATGCCATTTGGGCCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAg                                                                                                                                                                                                                               <  2:660342/234‑1 (MQ=32)   cGCCGATGCCATTTGGGCCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAggg                                                                                                                                                                                                                             <  2:259888/234‑1 (MQ=33)         tGCCATTTGGGCCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCaa                                                                                                                                                                                                                     <  1:393661/236‑1 (MQ=37)         tGCCATTTGCGCCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCaa                                                                                                                                                                                                                     <  1:308110/236‑1 (MQ=37)           ccATTTGGGCCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAAt                                                                                                                                                                                                                    >  1:652157/1‑235 (MQ=37)                   gCCACTCTCTCACTCGGGAGCACAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAggg                                                                                                                                                                                                                             <  2:152645/218‑1 (MQ=18)                           ctcATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCt                                                                                                                                                                                                                                   <  2:629821/204‑1 (MQ=11)                           ctcATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACat                                                                                                                                                                                                                               >  2:109749/1‑207 (MQ=14)                             cATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATc                                                                                                                                                                                                                   <  1:364/218‑1 (MQ=39)                             cATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGt                                                                                                                                                                                                  <  1:326128/235‑1 (MQ=255)                              aTTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGc                                                                                                                                                                                                                       <  1:244493/213‑1 (MQ=37)                                  gggAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCAccc                                                                                                                                                                                            <  1:714582/236‑1 (MQ=255)                                           gcagcaCACCATTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCaa                                                                                                                                                                                                                     <  2:103207/202‑1 (MQ=38)                                                     aGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAg                                                                                                                                                                                                          >  1:370928/1‑203 (MQ=255)                                                                         tCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGTGGAACGCAAt                                                                                                                                                                                                                    >  2:526331/1‑173 (MQ=38)                                                                         tCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGAcc                                                                                                                                                     >  1:679394/1‑236 (MQ=255)                                                                              cgcATTGAGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCaa                                                                                                                                                                                                                     <  2:296052/167‑1 (MQ=255)                                                                                        aCCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACg                                                                                                                                      >  1:351852/1‑236 (MQ=255)                                                                                                 aaGTATTCGTCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCgg                                                                                                                                                                                                    <  2:38029/165‑1 (MQ=255)                                                                                                  aGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAAc                                                                                                                             >  1:486869/1‑235 (MQ=255)                                                                                                       tCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACg                                                                                                                                      <  1:43500/221‑1 (MQ=255)                                                                                                            ggcTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGaa                                                                                                                              >  1:32534/1‑224 (MQ=255)                                                                                                                 aCCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCGCCTACAGGGGAACGCAATCACCCTGTAGCAGCGGGTTCACCCGCGCagatg                                                                                                                                                                                   >  1:29955/1‑164 (MQ=255)                                                                                                                        cGGATCAGTCGGCGAATGCTGTGCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAgatcacc                                                                                                                                                                                                 <  2:36156/145‑7 (MQ=255)                                                                                                                                  ggCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGt                                                                                                               >  2:541689/1‑217 (MQ=255)                                                                                                                                   gCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGa                                                                                                                                                                                        >  2:724684/1‑143 (MQ=255)                                                                                                                                   gCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGCACAGACAAACCCCGGTCGCCAcc                                                                                                        >  1:173342/1‑223 (MQ=255)                                                                                                                                   gCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCACGAACAGGCTg                                                                                                                                                                      >  2:207633/1‑161 (MQ=255)                                                                                                                                                tAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCACCGACACGTTAAGGCTGCTGACGCTAcc                                                                              <  1:541690/236‑1 (MQ=255)                                                                                                                                                        gATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGCACAGCCAAACCCCGGTCGCCACCg                                                                                                       >  1:170197/1‑203 (MQ=255)                                                                                                                                                        gATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCACCGACACGTTAAGGCTGCTGACGCTACCCGCCAt                                                                        >  2:341365/1‑234 (MQ=255)                                                                                                                                                          tGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGCAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGCCAGCGCTTGACCTGCCGCTg                                                                                                                                             >  2:439219/1‑163 (MQ=255)                                                                                                                                                              aGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGAc                                                                                                                                           <  2:679393/161‑1 (MQ=255)                                                                                                                                                                           cGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCACCGACACGTTAAGGCTGCTGACGCTACCCGCCATCGGCAACTTGACCAGGAAGTc                                                   <  1:341366/236‑1 (MQ=255)                                                                                                                                                                           cGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCACCGACACGTTAAGGCTGCTGACGCTACCCGCCATCGGCAACTTGACCAGGAAGTc                                                   <  1:272931/236‑1 (MQ=255)                                                                                                                                                                                     aTCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCAc                                                                                                         <  2:349030/172‑1 (MQ=255)                                                                                                                                                                                                tgtgCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAagag                                                                                                                                                                                    >  1:343019/1‑86 (MQ=255)                                                                                                                                                                                                tgtgCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAagag                                                                                                                                                                                    <  2:343018/86‑1 (MQ=255)                                                                                                                                                                                                    cGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCACCGACACGTTAAGGCTGCTGACGCTACCCGCCATCGGCAACTTGACCAGGAAGTCGCAATGCTCACGGGTGAGCCGgcg                           >  1:639061/1‑235 (MQ=255)                                                                                                                                                                                                     gACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCACCGACACGTTAAGGCTGCTGACGCTACCCGCCATCGGCAACTTGACCAGGAAGTCGCAATg                                             >  1:106742/1‑216 (MQ=255)                                                                                                                                                                                                         gcgcAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAga                                                                                                                                                                                                      <  2:154819/59‑2 (MQ=255)                                                                                                                                                                                                            ccgCCCGGAGGGGCTGGGTGATCTCCTCCAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGAc                                                                                                                                           <  1:246619/113‑1 (MQ=255)                                                                                                                                                                                                             aGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCACCGACACGTTAAgg                                                                                            >  1:115616/1‑161 (MQ=255)                                                                                                                                                                                                                            ggTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCACCGACACGTTAAGGCTGCTGACGCTACCCGCCATCGGCAACTTGAc                                                            >  1:585748/1‑178 (MQ=255)                                                                                                                                                                                                                            ggTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCACCGACACGTTAAGGCTGCTGACGCTACCCGCCATCGGCAACTTGACCAGGAAGTCGCAATGCTCACGGGTGAGCCGGCGCATGCCCTTGCCTTCCGCCCCCATg  >  1:143375/1‑236 (MQ=255)                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                       AACGCCGATGCCATTTGGGCCACTCTCTCATTCGGGAGCAAAGCAGCACACCAGTGCGGTCTACGGCCTCTTTCCCGCGCATTGGGAACCATAGCAAAGTATTCGGCGGCTGACCTACCCGGATCAGTCGGCGAATGCTTTTCTAGATCTCGATGTCAGTGCAGATCTGACGTCATGCGCATCCTGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGAACGCAATCACCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGAACAGGCTGAGAGTCAGCGCTTGACCTGCCGCTGACGCACGGCTTCGAACAGACAAACCCCGGTCGCCACCGACACGTTAAGGCTGCTGACGCTACCCGCCATCGGCAACTTGACCAGGAAGTCGCAATGCTCACGGGTGAGCCGGCGCATGCCCTTGCCTTCCGCCCCCATG  >  AE015451/5545442‑5545896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.