New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5988759	20 (0.500)	6 (0.160)	6/322	NT	24.9%	intergenic (+53/‑493)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA
	?	AE015451	5988951 =	17 (0.440)					intergenic (+245/‑301)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

ACTGGTGGGGTTGGGCCTGAGCGATGAACAGGCGGCGGACCGCATTGCACGGTTTACCCAGCATGACGAAGAGGTGCTGGAGGCCCAGGGGCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTA  >  AE015451/5988526‑5988987                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                     aCTGGTGGGGTTGGGCCTGAGCGATGAACAGGCGGCGGACCGCATTGCACGGTTTACCCAGCATGACGAAGAGGTGCTGGAGGCCCAGGGGCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGccgccc                                                                                                                                                                                                                                    <  1:591177/236‑1 (MQ=255)              ggCCTGAGCGATGAACAGGCGGCGGACCGCATTGCACGGTTTACCCAGCATGACGAAGAGGTGCTGGAGGCCCAGGGGCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCctccttggc                                                                                                                                                                                                                       <  1:726698‑M1/236‑10 (MQ=255)                                          gCATTGCACGGTTTACCCAGCATGACGAAGAGGTGCTGGAGGCCCAGGGGCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTc                                                                                                                                                                                           <  1:125582/236‑1 (MQ=255)                                                cACGGGTTACCCAGCATGACGAAGAGGTGCTGGAGGCCCAGGGGCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGccgccc                                                                                                                                                                                                                                    <  1:52561/189‑1 (MQ=255)                                                 aCGGTTTACCCAGCATGACGAAGAGGTGCTGGAGGCCCAGGGGCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAg                                                                                                                                                                                    <  1:702645/236‑1 (MQ=255)                                                           cAGCATGACGAAGAGGGGCTGGAGGCCCAGGGGCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTaa                                                                                                                                                                                                                <  1:114533/198‑1 (MQ=255)                                                              cATGACGAAGAGGTGCTGGAGGCCCAGGGGCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTcgatctcatgggcgcccaaaagctatcgccaggcacctggaagccatc                                                                                                                                                                          <  2:477041‑M1/233‑49 (MQ=255)                                                                  aCGAAGAGGTGCTGGAGGCCCAGGGGCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTgg                                                                                                                                                                        >  2:487342/1‑231 (MQ=255)                                                                                gAGGCCCAGGGGCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCaatc                                                                                                                                                                                  <  1:591222/207‑4 (MQ=255)                                                                                   gCCCAGGGGCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTg                                                                                                                                                   <  1:487343/235‑1 (MQ=255)                                                                                    cccAGGGGCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGgc                                                                                                                                                 <  1:442429/236‑1 (MQ=255)                                                                                                     gatgaCCGTGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGt                                                                                                                                                                                                                  <  1:48914/154‑1 (MQ=255)                                                                                                     gatgaCCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGatat                                                                                                                                   >  2:585044/1‑233 (MQ=255)                                                                                                          ccGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACg                                                                                                                                            <  2:427497/219‑1 (MQ=255)                                                                                                                                 ccAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGgc                                                                                                                                                 <  1:735739/191‑1 (MQ=255)                                                                                                                                  cAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCa                                                                                                                                              <  1:8686/193‑1 (MQ=255)                                                                                                                                     ggaggCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCgcgggcggcgctcgatctcatgggcgcccaaaaactatcgccaggcacctggaagccatcctgcaatttcctgacgatcacctcgccgccatgacgcgaactcacaaaaaccatcacaaatcgtctaattctc                                                                                                 >  1:6809‑M1/1‑102 (MQ=255)                                                                                                                                      gaggGGGGGGTGGAGCTGGAGCGGTTGTGTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTaa                                                                                                                                                                                                                <  2:204480/123‑1 (MQ=255)                                                                                                                                       aggCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTcgatctcatgggcgcccaaaaactatcgccaggcacctggaagccatcctgcaatttcctgacgatcacctcgccgccatgacgcgaactcacaaaaaccatcacaaatcgtctaattctca                                                                                                <  1:751891‑M1/234‑123 (MQ=255)                                                                                                                                         gcgcGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGcac                                                                                             <  1:585045/235‑1 (MQ=255)                                                                                                                                                            ggTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCgcgggcggcgctcgatctcatgggcgcccaaaaactatcgccaggcacctggaagccatcctgcaatttcctgacgatcacctcgccgccatgacgcgaactcacaaaaaccatcacaaatcgtctaattctcagctgggtcctacttccccgcgaa                                                                         >  1:329012‑M1/1‑79 (MQ=255)                                                                                                                                                                   tGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTa                                                                  <  1:9486/236‑1 (MQ=255)                                                                                                                                                                               ggACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGAGTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAg                                                                                                                                                                                    <  2:383454/110‑1 (MQ=255)                                                                                                                                                                                   tGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCgcgggcggcgctcgatctcatgggcgcccaaaaactatcgccaggcacctggaagccatcctgcaatttcctgacgatcacctcgccgccatgacgcgaactcacaaaaaccatcacaaatcgtctaattctcagctgggtcctacttccccgcgaaccatttcctacgttcacaccaat                                                  >  1:177957‑M1/1‑56 (MQ=255)                                                                                                                                                                                   tGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTcgatctcatgggcgcccaaaaactatcgccaggcacctggaagccatcctgcaatttcctgacgatcacctcgccgccatgacgcgaactcacaaaaaccatcacaaatcgtctaattctcagctgggtcctacttccccgcg                                                                           >  1:729361‑M1/1‑68 (MQ=255)                                                                                                                                                                                     aGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTTCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATcgcg                                                                                                                               <  2:230076/157‑1 (MQ=255)                                                                                                                                                                                        ccTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTcgatctcatgggcgcccaaaaactatcgccaggcacctggaagccatcctgcaatttcctgacgatcacctcgccgccatgacgcgaactcacaaaaaccatcacaaatcgtctaattctcagctgggt                                                                                         >  1:204353‑M1/1‑63 (MQ=255)                                                                                                                                                                                        ccTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTc                                                                                                            <  2:477989/173‑1 (MQ=255)                                                                                                                                                                                              ggCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCgcgggcggcgctcgatctcatgggcgcccaaaaactatcgccaggcacctggaagccatcctgcaattt                                                                                                                                                                 >  2:185804‑M1/1‑45 (MQ=255)                                                                                                                                                                                              ggCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCgcgggcggcgctcgatctcatgggcgcccaaaaactatcgccaggcacctggaagccatcctgcaattt                                                                                                                                                                 <  1:185804‑M1/114‑70 (MQ=255)                                                                                                                                                                                                            gggTTGTAGTGCCTGTGAGATTGGGCGCCGCgcgggcggcgctcgatctcatgggcgcccaaaaactatcgccaggcacctggaagccatcctgcaatttcctgacgatcacctcgccgccatgacgcgaactcacaaaaaccatcacaaatcgtctaattctcagctgggtcctacttccccgcgaaccatttcctacgttcacaccaatc                                                 <  2:6809‑M1/212‑182 (MQ=255)                                                                                                                                                                                                                          gtgAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACg                                                                                                                                            <  1:680112/107‑1 (MQ=255)                                                                                                                                                                                                                          gtgAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACg                                                                                                                                            >  2:680111/1‑107 (MQ=255)                                                                                                                                                                                                                                    gcgcCGCCCGCGCGGCGCTcgatctcatgggcgcccaaaaactatcgccaggcacctggaagccatcctgcaatttcctgacgatcacctcgccgccatgacgcgaactcacaaaaaccatcacaaatcgtctaattctcagctgggtcctacttccccgcgaaccatttcctacgttcacaccaatcccaagga                                          <  2:284428‑M1/195‑177 (MQ=255)                                                                                                                                                                                                                                       ccgcgcgggcggcgctcgatctcatgggcgcccaaaaactatcgccaggcacctggaagccatcctgcaatttcctgacgatcacctcgccgccatgacgcgaactcacaaaaaccatcacaaatcgtctaattctcagctgggtcctacttccccgcgaaccatttcctacgttcacaccaatcccaaggaattatcctacacaccgtgtcgacgcccgtctgattgtccg  >  1:687099‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                     ACTGGTGGGGTTGGGCCTGAGCGATGAACAGGCGGCGGACCGCATTGCACGGTTTACCCAGCATGACGAAGAGGTGCTGGAGGCCCAGGGGCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGTGGAGCTGGAGCGGTTGTTTGATTCGGATGCGGACTGAGGCCTTTTGGCGCGTGCCTTGAGGGTTGTAGTGCCTGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCGGGCCAGTTATTCCTGTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTA  >  AE015451/5988526‑5988987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.