New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	131895 =	39 (0.980)	4 (0.110)	3/320	NT	10.2%	coding (87/618 nt)	cc	Cytochrome c4
	?	AE015451	131994 =	33 (0.870)					coding (186/618 nt)	cc	Cytochrome c4

ACCCTTAGCCGTGTTGGATTAGCTGATGAACAAACTAGTCGTGAGTCTGCTGTTGACCTTGGGTGTCGCTGGTGCGGCCACTGCTGCGCAACCTATCAAAGGCGATGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCATTCAGCGACCAGGATCTGGCCGATATCGCCGCCTACTTCTCCAGCCAAAAAGGCAGCGTGGGGGCCGCCGATCCCAAGCTGGTCGAGCGCGGCCGCGCGTTGTTCAATGGCGGCGACCT  >  AE015451/131784‑132188                                                                                                                                                                                                                   |                                                                                                                                                                                                   aCCCTTAGCCGTGTTGGATTAGCTGATGAACAAACTAGTCGTGAGTCTGCTGTTGACCTTGGGTGTCGCTGGTGCGGCCACTGCTGCGCAACCTATCAAAGGCGATGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGat                                                                                                                                                                            >  1:364624/1‑235 (MQ=255)          cGTGTTGGATTAGCTGATGAACAAACTAGTCGTGAGTCTGCTGTTGACCTTGGGTGTCGCTGGTGCGGCCACTGCTGCGCAACCTATCAAAGGCGATGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTGCCCGAAACTGGCCGGCCAAGGCCAGCGCTAACTCGaaaaa                                                                                                                                                                                        >  1:302767/1‑214 (MQ=255)                ggATTAGCTGATGAACAAACTAGTCGTGAGTCTGCTGTTGACCTTGGGTGTCGCTGGTGCGGCCACTGCTGCGCAACCTATCAAAGGCGATGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCgg                                                                                                                                                                  >  2:284446/1‑230 (MQ=255)                ggATTAGCTGATGAACAAACTAGTCGTGAGTCTGCTGTTGACCTTGGGTGTCGCTGGTGCGGCCACTGCTGCGCAACCTATCAAAGGCGATGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGc                                                                                                                                                            <  1:672408/236‑1 (MQ=255)                 gATTAGCTGATGAACAAACTAGTCGTGAGTCTGCTGTTGACCTTGGGTGTCGCTGGTGCGGCCACTGCTGCGCAACCTATCAAAGGCGATGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGc                                                                                                                                                            <  1:284447/235‑1 (MQ=255)                 gATTAGCTGATGAACAAACTAGTCGTGAGTCTGCTGTTGACCTTGGGTGTCGCTGGTGCGGCCACTGCTGCGCAACCTATCAAAGGCGATGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCg                                                                                                                                                           <  1:455791/236‑1 (MQ=255)                 gATTAGCTGATGAACAAACTAGTCGTGAGTCTGCTGTTGACCTTGGGTGTCGCTGGTGCGGCCACTGCTGCGCAACCTATCAAAGGCGATGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAAACCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAaaca                                                                                                                                                                                      >  2:411341/1‑209 (MQ=255)                        ctggtcgctgaatgcggccagcatgccggtcatttccagcacggtacgcttgcccgacttgatatcgtgaagttgtttttcgagatagcgctggccttggccggccagtttcgggaagttcggtgccaggctgttgccgtcgggattgtggcaggcgccacacacggcggtcttggcctggccagcgCTATCTCGAAAAACAACTTCACGATATCa                                                                                                                                                                        <  2:553630‑M2/29‑1 (MQ=255)                              aCAAACTAGTCGTGAGTCTGCTGTTGACCTTGGGTGTCGCTGGTGCGGCCACTGCTGCGCAACCTATCAAAGGCGATGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTg                                                                                                                                                    >  1:472303/1‑230 (MQ=255)                                         gTGAGTCTGCTGTTGACCTTGGGTGTCGCTGGTGCGGCCACTGCTGCGCAACCTATCAAAGGCGATGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGaaa                                                                                                                                             <  2:572191/226‑1 (MQ=255)                                                   tggtGACCTTGGGTGTCGCTGGTGCGGCCACTGCTGCGCAACCTATCAAAGGCGATGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCATGGCACCGAACTTCCCGACACTGGCCGGCCAAGGCTCGCGCTATCTCGa                                                                                                                                                                                            >  1:106919/4‑169 (MQ=255)                                                   tgTTGACCTTGGGTGTCGCTGGTGCGGCCACTGCTGCGCAACCTATCAAAGGCGATGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCg                                                                                                                           >  1:611562/1‑234 (MQ=255)                                                     ttGACCTTGGGTGTCGCTGGTGCGGCCACTGCTGCGCAACCTATCAAAGGCGATGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCAt                                                                                                                        >  1:713474/1‑235 (MQ=255)                                                        aCCTTGGGTGTCGCTGGTGCGGCCACTGCTGCGCAACCTATCAAAGGCGATGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCATTCAg                                                                                                                    >  1:248111/1‑236 (MQ=255)                                                                      cgcttgcccgacttgatatcgtgaagttgtttttcgagatagCGCTGGCCCGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAACCAACTTCACGatat                                                                                                                                                                          <  1:646407‑M1/126‑1 (MQ=255)                                                                               cACTGCTGCGCAACCTATCAAAGGCGATGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCATTCAGCGACCAGGATCTGGCCGATATcg                                                                                             <  1:537652/236‑1 (MQ=255)                                                                                 cttgatatcgtgaagttgtttttcgagatagCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACCTCACGatat                                                                                                                                                                          <  2:520808‑M1/126‑1 (MQ=255)                                                                                   tgatatcgtgaagttgtttttcgagatagCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCATTCAGCGACCAg                                                                                                             <  2:553630‑M1/187‑1 (MQ=255)                                                                                     atatcgtgaggttgtttttcgagatagcgctggccttggccggccagtttcgggaagttcggtgccaggctgttgccgtcgggattgtggcaggcgccacacacggcggtcttggcctggccagcgCTATCTCGAAAAACAACTTCACGATATCAAg                                                                                                                                                                      <  2:520808‑M2/31‑1 (MQ=255)                                                                                     atatcgtgaagttggttttcgagatagcgctggccttggccggccagtttcgggaagttcggtgccaggctgttgccgtcgggattgtggcaggcgccacacacggcggtcttggccgggccagcgCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCg                                                                                                                                                           <  1:646407‑M2/42‑1 (MQ=255)                                                                                               aTCAAAGGCGATGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCATTCCGCGACCAGGATCTGGCCGATATCGCCCCCTCCTtc                                                                                  >  1:308484/1‑231 (MQ=255)                                                                                                 cAAAGGCGATGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCGATCTCGAAAAACAACTTCAc                                                                                                                                                                               >  2:424286/1‑136 (MQ=255)                                                                                                         aTGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCATTCAGCGACCAGGATCTGGCCGATATCGCCGCCTACTTCTCCAGCCAAAAAgg                                                                    >  1:555894/1‑235 (MQ=255)                                                                                                          tGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAACAACAACTTCACGATATCAAGTCGGGAAAGc                                                                                                                                                            <  2:623236/146‑1 (MQ=255)                                                                                                             cgccgcTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCTGGCAAGCGTACCGTGCTGGAAATGACCgg                                                                                                                                      >  2:633851/1‑165 (MQ=255)                                                                                                             cgccgcTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCATTCAGCGACCAGGATCTGGCCGATATCGCCGCCTACtt                                                                                   >  1:623938/1‑216 (MQ=255)                                                                                                                          gccaAGCCCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACt                                                                                                                                                                                   <  2:167826/107‑1 (MQ=255)                                                                                                                             aaGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTAcc                                                                                                                                                       >  2:504636/1‑132 (MQ=255)                                                                                                                             aaGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCATTCAGCGACCAGGATCTGGCCGATATCGCCGCCTACTTCTCCAGCCAAAAAGGCAGCGTGGGGGCCGCCGATcc                                               >  1:407718/1‑236 (MQ=255)                                                                                                                                  cgccgTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCg                                                                                                                                                           <  2:178918/123‑1 (MQ=255)                                                                                                                                       tgtgtgGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCATTCAGCGACCAGGATCTGGCCGATATCGCCGCCTACTTCTCCAGCCacaa                                                                       >  1:247911/1‑202 (MQ=255)                                                                                                                                       tgtgtgGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCATTCAGCGACCAGGATCTGGCCGATATCGCCGCCTACTTCTCCAGCCAAAAAGGCAGCGTGGGGGCCGCCGATCCCAAGCTgg                                       >  1:273566/1‑234 (MQ=255)                                                                                                                                       tgtgtgGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCATTCAGCGACCAGGATCTGGCCGATATCGCCGCCTACTTCTCCAGCCAAAAAGGCAGCGTGGGGGCCACCGATCCCAAGCTGGTc                                     >  1:698917/1‑236 (MQ=255)                                                                                                                                           tgGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCATTCAGCGACCAGGATCTGGCCGATATCGCCGCCTACTTCTCCAGCCAAAAAGGCAGCGTGGGGGCCGCCGATCCCAAGCTGGTCGa                                   <  2:364623/234‑1 (MQ=255)                                                                                                                                                 cTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCATTCAGCGACCAGGATCTgg                                                                                                      <  2:120493/161‑1 (MQ=255)                                                                                                                                                                    cgggattgtggcaggcgcgacacacggcggtcttggcctggccagcgCTATCTCGAAAAACAACTTCACGATATCa                                                                                                                                                                        <  2:441990‑M2/29‑1 (MQ=255)                                                                                                                                                                            ggCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCATTCAGCGACCAGGATCTGGCCGATATCGCCGCCTACTTCTCCAGCCAAAAAGGCAGCGTGGGGGCCACCGATCCCAAGCTGGTCGAGCGCGGCCGCGCGTTGTTCAATGGCGGCGACCt  <  2:698916/234‑1 (MQ=255)                                                                                                                                                                                   aaCTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCATTCAGCGACCAGGATCTGGCCGATATCGCCGCCTACTTCTCCAGCCAAAAAGGCAGCGTGGGGGCCGCCGATCCCAAGCTGGTCGAGcgcg                              <  1:483838/199‑1 (MQ=255)                                                                                                                                                                                      ttCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCATTCAGCGACCAGGATCTGGCCGcta                                                                                                >  2:213541/1‑130 (MQ=255)                                                                                                                                                                                                     ggccAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCATTCAGCGACCAGGATCTGGCCGATATCTCCGCCTACTTCTCCAGCCAAAAAGGCAGCGTGGGGGCCGCCGATCCCAAGCTGGTCGATCGCGGCCGCGCGTTGTTCAATGgcggcg      >  1:238015/1‑205 (MQ=255)                                                                                                                                                                                                                   |                                                                                                                                                                                                   ACCCTTAGCCGTGTTGGATTAGCTGATGAACAAACTAGTCGTGAGTCTGCTGTTGACCTTGGGTGTCGCTGGTGCGGCCACTGCTGCGCAACCTATCAAAGGCGATGCCGCCGCTGGCCAGGCCAAGACCGCCGTGTGTGGCGCCTGCCACAATCCCGACGGCAACAGCCTGGCACCGAACTTCCCGAAACTGGCCGGCCAAGGCCAGCGCTATCTCGAAAAACAACTTCACGATATCAAGTCGGGCAAGCGTACCGTGCTGGAAATGACCGGCATGCTGGCCGCATTCAGCGACCAGGATCTGGCCGATATCGCCGCCTACTTCTCCAGCCAAAAAGGCAGCGTGGGGGCCGCCGATCCCAAGCTGGTCGAGCGCGGCCGCGCGTTGTTCAATGGCGGCGACCT  >  AE015451/131784‑132188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.