New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3081615	30 (0.750)	3 (0.080)	3/322	NT	9.3%	coding (900/1719 nt)	PP_2691	conserved protein of unknown function
	?	AE015451	= 3081628	30 (0.780)					coding (887/1719 nt)	PP_2691	conserved protein of unknown function

GGGGTACAGCTCCAGCAGCAGGCTGACCAGAAGCTCCTGGCAGCCCACCCCCGTGTGTAATTGCGCCCAGGCCAGCAGGCGCGGCCAAAGGCCCGCGCCGTCGGCTTGCGTGCCAAGCCAGGTGGCCAGTAAAGCAAGCTCGGCCAAGGTTTGCAGGTTCTGCTCATGCTGGCGCTGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGCCGGGGCCAGTTGCACTGCCCGCTGCGGGGCGAGTGCCTGGGCCATGTGGTTGATCTGCTCGATGCTGAAGTGA  >  AE015451/3081396‑3081861                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                          ggggTACAGCTCCAGCAGCAGGCTGACCAGAAGCTCCTGGCAGCCCACCCCCGTGTGTAATTGCGCCCAGGCCAGCAGGCGCGGCCAAAGGCCCGCGCCGTCGGCTTGCGTGCCAAGCCAGGTGGCCAGTAAAGCAAGCTCGGCCAAGGTTTGCAGGTTCTGCTCATGCTGGCGCTGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAggc                                                                                                                                                                                                                                        <  1:492435‑M2/236‑4 (MQ=255)         gCTCCAGCAGCAGGCTGACCAGAAGCTCCTGGCAGCCCACCCCCGTGTGTAATTGCGCCCAGGCCAGCAGGCGCGGCCAAAGGCCCGCGCCGTCGGCTTGCGTGCCAAGCCAGGTGGCCAGTAAAGCAAGCTCGGCCAAGGTTTGCAGGTTCTGCTCATGCTGGCGCTGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCTCGcc                                                                                                                                                                                                                                   >  1:464268/1‑233 (MQ=255)                       cTGACCAGAAGCTCCTGGCAGCCCACCCCCGTGTGTAATTGCGCCCAGGCCAGCAGGCGCGGCCAAAGGCCCGCGCCGTCGGCTTGCGTGCCAAGCCAGGTGGCCAGTAAAGCAAGCTCGGCCAAGGTTTGCAGGTTCTGCTCATGCTGGCGCTGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAgg                                                                                                                                                                                                                                         <  2:464919‑M2/213‑3 (MQ=255)                                                                   ccAGGCCAGCAGGCGCGGCCAAAGGCCCGCGCCGTCGGCTTGCGTGCCAAGCCAGGTGGCCAGTAAAGCAAGCTCGGCCAAGGTTTGCAGGTTCTGCTCATGCTGGCGCTGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCa                                                                                                                                                                                                       >  1:750100/1‑203 (MQ=255)                                                                   ccAGGCCAGCAGGCGCGGCCAAAGGCCCGCGCCGTCGGCTTGCGTGCCAAGCCAGGTGGCCAGTAAAGCAAGCTCGGCCAAGGTTTGCAGGTTCTGCTCATGCTGGCGCTGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGGTTcc                                                                                                                                                                                >  1:38030/1‑226 (MQ=255)                                                                                  cgGCCAAAGGCCCGCGCCGTCGGCTTGCGTGCCAAGCCAGGTGGCCAGTAAAGCAAGCTCGGCCAAGGTTTGCAGGTTCTGCTCATGCTGGCGCTGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTgc                                                                                                                                                                                                           <  2:677442/184‑1 (MQ=255)                                                                                          ggCCCGGGCCGGCGGCTGGCGTGCCGAGCCGGGTGGCCAGTACAGCAAGCTCGGCCAAGGTTTGCAGGTGCTGCTCATGCTGGCGCTGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTc                                                                                                                                                            <  2:245762/223‑1 (MQ=255)                                                                                                cgcCGTCGGCTTGCGTGCCAAGCCAGGTGGCCAGTAAAGCAAGCTCGGCCAAGGATTGCAGGTTCTGCTCATGCTGGCGCTGGTCTTCGGTCCGGGACTGGCTCAGGGGCAACTGGGCGCGCGCCAGCAATTGCTGCAggcgcgcgcccagttgc                                                                                                                                                                                                                          >  1:361011‑M2/1‑138 (MQ=255)                                                                                                    gTCGGCTTGCGTGCCAAGCCAGGTGGCCAGTAAAGCAAGCTCGGCCAAGGTTTGCAGGTTCTGCTCATGCTGGCGCTGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGggtggt                                                                                                                                           <  1:464920/230‑1 (MQ=255)                                                                                                             cGTGCCAAGCCAGGTGGCCAGTAAAGCAAGCTCGGCCAAGGTTTGCAGGTTCTGCTCATGCTGGCGCTGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAggg                                                                                                                             <  1:355468/235‑1 (MQ=255)                                                                                                                  cAAGCCAGGTGGCCAGTAAAGCAAGCTCGGCCAAGGTTTGCAGGTTCTGCTCATGCTGGCGCTGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCAtt                                                                                                                       >  1:582396/1‑236 (MQ=255)                                                                                                                                              ggCCAAGGTTTGCAGGTTCTGCTCATGCTGGCGCTGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAggt                                                                                                                                                    >  2:288317/1‑177 (MQ=255)                                                                                                                                                 cAAGGTTTGCAGGTTCTGCTCATGCTGGCGCTGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAgg                                                                                         >  1:178740/1‑235 (MQ=255)                                                                                                                                                             gTTCTGCTCATGCTGGCGCTGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCAccagggcc                                                                                                                                                                                            >  1:639646/1‑124 (MQ=255)                                                                                                                                                             gTTCTGCTCATGCTGGCGCTGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCAccagggcc                                                                                                                                                                                            <  2:639645/124‑1 (MQ=255)                                                                                                                                                                   cTCATGCTGGCGCTGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACgg                                                                                                                                                                                                                              >  1:514528/1‑84 (MQ=255)                                                                                                                                                                              gcTGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAg                                                                              <  1:577645/217‑1 (MQ=255)                                                                                                                                                                                tGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGcc                                                                          >  1:566970/1‑219 (MQ=255)                                                                                                                                                                                tGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCC‑CCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGa                                                                                                                                                  <  1:32608/146‑1 (MQ=255)                                                                                                                                                                                     ttCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGTGGCCATTCCCAGCCCGGTcg                                                                                                          >  1:73793/1‑182 (MQ=255)                                                                                                                                                                                       cGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAggcgcgcgcccagttgcacctgagcaagtcccggaccgaagaccagcgccagcatgagcagaacctgcaaaccttggc                                                                                                                                                             >  1:119159‑M2/1‑51 (MQ=255)                                                                                                                                                                                          tCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTTCTGCAggcgcgcgcccagttgcccctgagccggtcccggaccgaagaccagcgccagcatgagcagaacctgcaaacctt                                                                                                                                                                >  1:651502‑M2/1‑48 (MQ=255)                                                                                                                                                                                               gACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGCCGGGGCCAGTTGCa                                                             >  2:293778/1‑217 (MQ=255)                                                                                                                                                                                               gACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGACGGGGCCAGTTGCACTGGCCGCTGCggg                                               >  1:230208/1‑231 (MQ=255)                                                                                                                                                                                                       cAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGCCGGGGCCAGTTGCACTGCCCGCTGCGGGGCGAGTGCCTgg                                   >  1:286061/1‑235 (MQ=255)                                                                                                                                                                                                       cAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCCCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTGTCgcgc                                                                                                                                                                             >  2:94667/1‑97 (MQ=255)                                                                                                                                                                                                            gCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCGCAGCCCTGTCGCGTTTCCGACCCCCAGGTa                                                                                       >  2:378293/1‑178 (MQ=255)                                                                                                                                                                                                            gCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGCCGGGGCCAGTTGCACTGCCCGCTGCGGGGCGAGTGCCTGGGCCAt                              >  1:488357/1‑235 (MQ=255)                                                                                                                                                                                                                 tGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGtt                                                                                                      <  2:244360/158‑1 (MQ=255)                                                                                                                                                                                                                 tGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGCCGGGGCCAGTTGCACTGCCCGCTGCGGGGCGAGTGCCTGGGCCAtgtg                           >  2:681008/1‑233 (MQ=255)                                                                                                                                                                                                                  gggCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGCCGGGGCCAGTTg                                                               >  2:366717/1‑196 (MQ=255)                                                                                                                                                                                                                  gggCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGCCGGGGCCAGTTGCACTGCCCGCTGCGGGGCGAGTGCCTGGGCCAtg                             <  1:404278/230‑1 (MQ=255)                                                                                                                                                                                                                  gggCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGCCGGGGCCAGTTGCACTGCCCGCTGCGGGGCGAGTGCCTGGGCCAtg                             >  2:404277/1‑230 (MQ=255)                                                                                                                                                                                                                       cgcgcCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGCCGGGGCCAGTTGCACTGCCCGCTGCGGGGCGAGTGCCTGGGCCATGTGGTTGATCt                   >  1:634409/1‑235 (MQ=255)                                                                                                                                                                                                                       cgcgcCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGCCGGGGCCAGTTGCACTGCCCGCTGCGGGGCGAGTGCCTGGGCCATGTGGTTGATCt                   <  1:293779/235‑1 (MQ=255)                                                                                                                                                                                                                            cAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGCCGGGGCCAGTTGCACTGCCCGCTGCGGGGCGAGTGCCTGGGCCATGTGGTTGATCTGCTCGa             >  1:395911/1‑236 (MQ=255)                                                                                                                                                                                                                                        cAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCGGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGCCGGGGCCAGTTGCACTGCCCGCTGCGGGGCGAGTGCCTGGGCCATGTGGTTGATCTGCTCGATGCTGAAGTGa  <  1:422841/235‑1 (MQ=255)                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                          GGGGTACAGCTCCAGCAGCAGGCTGACCAGAAGCTCCTGGCAGCCCACCCCCGTGTGTAATTGCGCCCAGGCCAGCAGGCGCGGCCAAAGGCCCGCGCCGTCGGCTTGCGTGCCAAGCCAGGTGGCCAGTAAAGCAAGCTCGGCCAAGGTTTGCAGGTTCTGCTCATGCTGGCGCTGGTCTTCGGTCCGGGACTGGCTCAGGTGCAACTGGGCGCGCGCCAGCAATTGCTGCAGGCGCGCCAACGGGGCGGGCTCCGCCGGCTGCGCCAGCACCAGGGCCAGGGCCGTTTCCCGCGTACTGATCCAGTGCTCCACCAGTTGAGGGTGGTTGATCAGAAAAGGGGCCATTCCCAGCCCGGTCGCGTTGCCGACCCCCAGGTAGCGTTGAAGGGCCGGGGCCAGTTGCACTGCCCGCTGCGGGGCGAGTGCCTGGGCCATGTGGTTGATCTGCTCGATGCTGAAGTGA  >  AE015451/3081396‑3081861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.