New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4945203	22 (0.550)	4 (0.110)	4/318	NT	11.1%	intergenic (+563/+235)	PP_5673/flhB	putative D‑alanine‑‑D‑alanine ligase/flagellin export apparatus, substrate specificity protein
	?	AE015451	4945621 =	43 (1.140)					coding (960/1143 nt)	flhB	flagellin export apparatus, substrate specificity protein

TCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTGGTGATGATCACATCTGCATCCGGTACCGCCGCCATCATGCGCCGCTGCGACACCTCGCGCTGCAGTTGGCGAA  >  AE015451/4945406‑4945847                                                                                                                                                                                                                        |                                                                                                                                                                                                                                    ccgtgagggttttgtcgcctgtgagatcgagcgccgcccgcgcggcgcaGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAg                                                                                                                                                                                                                    <  2:667557‑M2/184‑1 (MQ=255)            gCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGc                                                                                                                                                                                                                            >  2:434609/1‑214 (MQ=255)                               gATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTcc                                                                                                                                                                                     >  1:450025/1‑233 (MQ=255)                                   aaCTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATc                                                                                                                                                                               >  1:550576/1‑236 (MQ=255)                                     cTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATc                                                                                                                                                                                                                <  1:648698/201‑1 (MQ=255)                                             gcgcaGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGcc                                                                                                                                                                      <  1:389837‑M2/230‑1 (MQ=255)                                                                      tcgtcCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑t                                                                                                                                                              <  2:487410/217‑1 (MQ=255)                                                                       gcgagtcctcttgatgcaaaactttgacgcccagggggcgcctgcggctggcattgctagaagctttccaactttgtgatctgctgtgaatcggggtgttcgccgtgaggtttttgtcgcctgtgagatcgagcgccgcccgcgcCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCcagcag                                                                                                                                           >  1:536684‑M2/146‑235 (MQ=255)                                                                       cgtcCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACgt                                                                                                                                                                                             >  1:669105/1‑185 (MQ=255)                                                                         tcCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑t                                                                                                                                                              <  2:550575/214‑1 (MQ=255)                                                                                     tctGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCAcc                                                                                                                            <  1:475239/236‑1 (MQ=255)                                                                                       tGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCCAGGTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGAtggt                                                                                                                                                                                                        >  2:236545/1‑157 (MQ=255)                                                                                            gcTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAAGCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGgcgc                                                                                                                                  >  1:256017/1‑223 (MQ=255)                                                                                               tgcccttgccGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCCCCTGCGATGCTGCCAGGTATAGCCCCGCCGGGATCTCTTGCTCAAGTTCGGTGGAGTAATAGCTCGCCCGCGCCAGCGCCGGCGAt                                                                                                                                                                                                                         <  2:723982/134‑1 (MQ=255)                                                                                                        cGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTcc                                                                                                                  <  1:539527/227‑1 (MQ=255)                                                                                                              ggTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCa                                                                                                     >  2:646747/1‑234 (MQ=255)                                                                                                               cctgcggctggcattgctagaagctttccaactttgtgatctgctgtgaatcggggtgttcgccgtgaggtttttgtcgcctgtgagatcgagcgccgcccgcgcCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCaaa                                                                                                   <  1:97899‑M2/130‑1 (MQ=255)                                                                                                                           cTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGcc                                                                                                                                                                                                                               >  2:317169/1‑100 (MQ=255)                                                                                                                           cTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGcc                                                                                                                                                                                                                               <  1:317170/100‑1 (MQ=255)                                                                                                                             ggAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGGATCTTCAACGCCATGCAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCCCTCTCCgggac                                                                                                             >  2:124530/1‑209 (MQ=255)                                                                                                                             ggAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCtt                                                                                                                       >  2:507701/1‑201 (MQ=255)                                                                                                                                  gaagctttccaactttgtgatctgctgtgaatcggggtgttagccgtgaggtttttgtcgcctgtgagatcgagcgccgcccgcgcCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCg                                                                                <  1:208492‑M2/149‑1 (MQ=255)                                                                                                                                   caTACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCTGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCg                                                                                <  1:434330/234‑1 (MQ=255)                                                                                                                                             cACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTGGtgat                                                                      <  2:350413/234‑1 (MQ=255)                                                                                                                                              aCCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTGGTgatgat                                                                   <  1:646748/236‑1 (MQ=255)                                                                                                                                                cTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGc                                                                                                      >  1:374297/1‑199 (MQ=255)                                                                                                                                                cTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTg                                                                           >  1:457106/1‑226 (MQ=255)                                                                                                                                                cTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTg                                                                           <  2:457105/226‑1 (MQ=255)                                                                                                                                                 tGCGCCCCAGACAGGTACCGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTtgtg                                                                                                                                                                                                     <  1:145671/104‑1 (MQ=255)                                                                                                                                                 tGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTc                                                                                 >  1:548707/1‑219 (MQ=255)                                                                                                                                                 tGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTc                                                                                 <  2:548706/219‑1 (MQ=255)                                                                                                                                                 tGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACAGCGCCGCACCg                                                                                                                           >  1:84191/1‑177 (MQ=255)                                                                                                                                                 tGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGCTGTGCTCCACGCCAATTTCAAGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGcgccgc                                                                                                                               >  2:706746/1‑173 (MQ=255)                                                                                                                                                 tGCGCCACCGCCAGGTACAGCCCCGCC‑GGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGcc                                                                                                                                                                      <  2:146541/134‑1 (MQ=255)                                                                                                                                                      ccccGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGAt                                                                                                                                                                                                                         <  2:132786/77‑1 (MQ=255)                                                                                                                                                       aCCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAg                                                                                                  <  1:507702/196‑1 (MQ=255)                                                                                                                                                             cggTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATaa                                                                                       <  1:704577/200‑1 (MQ=255)                                                                                                                                                               gTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTGGTGATGATCACATCTGCATCCgg                                                    <  1:434610/234‑1 (MQ=255)                                                                                                                                                                  cggggtgttcgtcgggaggtttttgtcgcgtgtgaggtcgagcgccgcccgcgtCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCTAATTTCa                                                                                                                                                                                     <  2:482256‑M2/49‑1 (MQ=255)                                                                                                                                                                         gccgGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGACCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCaaa                                                                                                   <  2:424539/177‑1 (MQ=255)                                                                                                                                                                            gggATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCt                                                                                                                                                     >  2:265133/1‑124 (MQ=255)                                                                                                                                                                            gggATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCt                                                                                                                                                     <  1:265134/124‑1 (MQ=255)                                                                                                                                                                            gggATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCAACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCtt                                                                                                                                                    >  2:314740/1‑125 (MQ=255)                                                                                                                                                                                  tcCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTGGtgat                                                                      <  2:256016/197‑1 (MQ=255)                                                                                                                                                                                   ccTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTGGTGATGATCACATCTGCATCCGGTAccg                                               <  2:653782/219‑1 (MQ=255)                                                                                                                                                                                            gTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCa                                                                                          >  2:53845/1‑167 (MQ=255)                                                                                                                                                                                                    gAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCgg                                                                                                                >  2:200382/1‑137 (MQ=255)                                                                                                                                                                                                    gAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCAGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTGGTGATGATCACATc                                                             >  1:312455/1‑188 (MQ=255)                                                                                                                                                                                                         aTAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTGGTGATGATCACATCTGCATCCGGTACCGCCGCCATCATGCGCGGCTGCGACACCTCGCGCTGCACtt        >  1:164437/1‑236 (MQ=255)                                                                                                                                                                                                               cgtccgcgcCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTGGTGATGATCACATCTGCATCCGGTACCGCCGCCATCATGCGCCGCTGCGACACCTCGCGCTGCAGTTGGCGaa  >  1:414335‑M2/10‑236 (MQ=255)                                                                                                                                                                                                                 cccgcgcCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTGGTGATGATCACATCTGCATCCGGTACCGCCGCCATCATGcgccg                               >  1:152904‑M2/8‑205 (MQ=255)                                                                                                                                                                                                                  ccgcgcCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCa                                                                                                                                                                     >  1:678973‑M2/7‑71 (MQ=255)                                                                                                                                                                                                                  ccgcgcCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCa                                                                                                                                                                     <  2:678972‑M2/65‑1 (MQ=255)                                                                                                                                                                                                                  ccgcgcCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATTCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAg                                                                                                  >  2:110876‑M2/7‑138 (MQ=255)                                                                                                                                                                                                                  ccgcgcCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAATTCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAg                                                                                                  <  1:110876‑M2/132‑1 (MQ=255)                                                                                                                                                                                                                  ccgcgcCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTGGTGATGATCACATCTGCATCCGGt                                                   >  2:515446‑M2/7‑184 (MQ=255)                                                                                                                                                                                                                  ccgcgcCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTGGTGATGATCACATCTGCATCCGGTACCGCCGCCATCATGcgccgc                              >  2:679174‑M2/7‑205 (MQ=255)                                                                                                                                                                                                                    gcgcCAGCGCCGGCGATTCGAGGGTCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTGCGCCAGCAGCAACGGCGCCGCACCGCCTTTCTcc                                                                                                                  >  2:446975‑M2/5‑119 (MQ=255)                                                                                                                                                                                                                    gcgcCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCAGAATGCGTCGGGTTGGt                                                                         >  1:117497‑M2/5‑160 (MQ=255)                                                                                                                                                                                                                       cCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTGGTGATGATCACATCTGCATCCGGTACCGCCGCCATCATGCGCCGCTGCGACACCTCGCGCTGCAGTTGGc     >  1:176875‑M2/2‑225 (MQ=255)                                                                                                                                                                                                                        |                                                                                                                                                                                                                                    TCACAGGCAACGCAAACCTATCGCCGAACAGATCAACTGTCGCGGCGCAGGTCCGGCGGGATCGGCAGGTCGTCCTTCAGTGGCTCTGGGCGCTTGCCCTTGCCGGCGCGGTATTGGCGAATCTGGAACACATACGCCAGCACCTGCGCCACCGCCAGGTACAGCCCCGCCGGGATCTCCTGCTCAAGTTCGGTGGAGTAATAGATCGCCCGCGCCAGCGCCGGCGATTCGAGGATCTGGATGTTGTGCTCCACGCCAATTTCACGAATCTTCAACGCCATGAAA‑TCGCTACCCTTGGCCAGCAGCAACGGCGCCGCACCGCCTTTCTCCGGGTCGTATTGCAAAGCCACCGCATAATGCGTCGGGTTGGTGATGATCACATCTGCATCCGGTACCGCCGCCATCATGCGCCGCTGCGACACCTCGCGCTGCAGTTGGCGAA  >  AE015451/4945406‑4945847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.