Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | AE015451 | 210,799 | T→C | 9.1% | D5435D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | AE015451 | 210,799 | 0 | T | C | 9.1% | 120.5 / 2.3 | 43 | D5435D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
Reads supporting (aligned to +/- strand): ref base T (24/15); new base C (2/2); total (26/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.17e-01 |
GTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCAATCAACAACCACAGTGCATTGA > AE015451/210579‑211025 | gTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGc < 1:337893/236‑1 (MQ=37) cgCAACGAAGGCGACCTGGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCAt < 1:345644/235‑1 (MQ=18) tCACCATCACCGCCGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACAGGt > 1:102983/1‑236 (MQ=21) tCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGc > 2:282958/1‑197 (MQ=33) cAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGGTTACAACGATGCTGGCCAGATc > 1:358915/1‑183 (MQ=14) tGGCCGAGAACGTCAAACCGACCTTCACTGGTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCAt < 2:138106/184‑1 (MQ=18) ttCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGacac < 1:218995/235‑1 (MQ=38) cGTCATCCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGt < 2:102983/162‑1 (MQ=18) aaCCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGt > 2:183263/1‑158 (MQ=33) aGCCGCTGGCTCACGACCTGGTCGTGACCCGGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCaa < 2:237874/199‑1 (MQ=255) gCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGGAGACGCCACTGGt > 2:246670/1‑166 (MQ=21) ccGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAgtggt < 1:183263/236‑1 (MQ=38) cGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAgtggt < 1:405819/235‑1 (MQ=40) gCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGTGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCaa > 2:473281/1‑137 (MQ=12) ccTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTcggc > 2:524497/1‑135 (MQ=34) cGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACt > 2:620379/1‑142 (MQ=35) cTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCCTCgggt > 1:236680/1‑178 (MQ=255) gCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTCTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTcggcg > 2:631235/1‑119 (MQ=17) aGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCATACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCGACGTTCGAGAACCtcg > 2:705089/1‑139 (MQ=2) aCCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCgaga < 1:377113/130‑1 (MQ=38) aCCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCgaga > 2:377112/1‑130 (MQ=38) aTCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACCTa > 1:733132/1‑236 (MQ=255) cAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGaa > 1:278470/1‑217 (MQ=40) ccGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAGCTGggcg > 1:456543/1‑135 (MQ=255) ccGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATc > 1:670812/1‑236 (MQ=255) gaCCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGGGCGACCTTCGAGAACCTGCAACTGGGCGGCa > 1:229405/1‑131 (MQ=255) gagcCGTCCACCCACGCCGCGCAGGGTGATGACGTGTACACCGACGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACGGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCACCGCTTCGGTTCAAGTGACCGACACCACCGACGAAgtggtg < 2:137226/163‑1 (MQ=11) tGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAGGCGGCga > 2:690575/1‑189 (MQ=39) cgcAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACt > 2:593015/1‑158 (MQ=255) cgcAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACt < 1:593016/158‑1 (MQ=255) cgcAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAGGCAGCGAGAt > 1:613565/1‑190 (MQ=39) cgcAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGGCGGTCACCGAAGGCGGCGAGATCACCCACACCATCACGCTGACCAACCAAGACGGTCTGCCAATcaac > 1:125802/1‑236 (MQ=255) tgggCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCa > 2:524310/2‑48 (MQ=38) aGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCCACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAgtgggg > 1:74014/1‑141 (MQ=255) aGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCaaa > 2:222007/1‑103 (MQ=255) aGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCAc < 1:698951/190‑1 (MQ=255) aGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCAc > 2:698950/1‑190 (MQ=255) gCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCAATCaacaac < 1:103150/233‑1 (MQ=255) gCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCa > 2:672547/1‑198 (MQ=40) gACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCAATCAACAACCACAGTGc < 1:284937/236‑1 (MQ=255) gACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCAATCAACAACCACAGTGc < 1:111503/236‑1 (MQ=40) gTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATTAACAACCACAGTGCAt < 1:302322/235‑1 (MQ=37) ttACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCAATCAACAACCACAGTGCATTGa < 1:672548/236‑1 (MQ=255) tGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGAACTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGGCACCgcc > 2:111503/1‑152 (MQ=255) | GTACCCCAGGCAACGAAGGCGACCTGGTCAAGGTCACCATCACCGCCGACCAGACTTCGGTGGCCGAGAACGTCAAACCGACCTTCACTGTTCACGTCAACCAGCCGCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAATGCCCAGGTCACCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCTGGGCATCAACTCGGCGGTAGACGCCACTGGTGCGACCTTCGAGAACCTGCAACTGGGCGGCAACGCTTCGGTTCAAGTGACCGACACCACCGACGAAGTGGTGGCCAAGCTGACTGCGACCCCGTCGGTCACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCAATCAACAACCACAGTGCATTGA > AE015451/210579‑211025 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |