Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | AE015451 | 3,142,272 | C→T | 100% | A74V (GCG→GTG) | PP_2758 → | putative Ribose ABC transporter, periplasmic ribose‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | AE015451 | 3,142,272 | 0 | C | T | 100.0% | 120.7 / NA | 33 | A74V (GCG→GTG) | PP_2758 | putative Ribose ABC transporter, periplasmic ribose‑binding protein |
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (16/17); total (16/17) | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
CGAGGTGACCAATGAGTGACAACGACTGCTCCGGCATGTCCCGGCGCTGCCTGCTCGGCGCGTCCTCGGCGATGCTCGCTCTCGGGCTTGCCGCACCATTGACCCGCGCCATGGCGGCTGGAGCCGACAGCGGTGCCGAGGCCAGTGCCACAGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGCGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATGGTGACCCAGTTGCAGAATCTGGTGACGCTGAAGCCCGATGCAGTTATTCACACCCTCGGCACGCTGAGCATCATCGAGCCCTGGTTCAAGCGCATCAGCGCCGCCGGCATCCCGCTGTTCACCATCGAGGTGCCGTCGCAGT > AE015451/3142041‑3142487 | cGAGGTGACCAATGAGTGACAACGACTGCTCCGGCATGTCCCGGCGCTGCCTGCTCGGCGCGTCCTCGGCGATGCTCGCTCTCGGGCTTGCCGCACCATTGACCCGCGCCATGGCGGCTGGAGCCGACAGCGGTGCCGAGGCCAGTGCCACAGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCa < 1:614729/235‑1 (MQ=255) cTGCTCCGGCATGTCCCGGCGCTGCCTGCTCGGCGCGTCCTCGGCGATGCTCGCTCTCGGGCTTGCCGCACCATTGACCCGCGCCATGGCGGCTGGAGCCGACAGCGGTGCCGAGGCCAGTGCCACAGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCg > 1:633029/1‑215 (MQ=255) ggCATGTCCCGGCGCTGCCTGCTCGGCGCGTCCTCGGCGATGCTCGCTCTCGGGCTTGCCGCACCATTGACCCGCGCCATGGCGGCTGGAGCCGACAGCGGTGCCGAGGCCAGTGCCACAGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGcc < 1:642198/236‑1 (MQ=255) tGTCCCGGCGCTGCCTGCTCGGCGCGTCCTCGGCGATGCTCGCTCTCGGGCTTGCCGCACCATTGACCCGCGCCATGGCGGCTGGAGCCGACAGCGGTGCCGAGGCCAGTGCCACAGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTgg < 1:130392/222‑1 (MQ=255) cccGGCGCTGCCTGCTCGGCGCGTCCTCGGCGATGCTCGCTCTCGGGCTTGCCGCACCATTGACCCGCGCCATGGCGGCTGGAGCCGACAGCGGTGCCGAGGCCAGTGCCACAGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGa < 1:336732/202‑1 (MQ=255) gcgcGTCCTCGGCGATGCTCGCTCTCGGGCTTGCCGCACCATTGACCCGCGCCATGGCGGCTGGAGCCGACAGCGGTGCCGAGGCCAGTGCCACAGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCaa > 1:620245/1‑235 (MQ=255) tCCTCGGCGATGCTCGCTCTCGGGCTTGCCGCACCATTGACCCGCGCCATGGCGGCTGGAGCCGACAGCGGTGCCGAGGCCAGTGCCACAGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTa > 1:283266/1‑186 (MQ=255) cgcgCCATGGCGGCTGGAGCCGACAGCGGTGCCGAGGCCAGTGCCACAGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCa > 2:675582/1‑131 (MQ=255) cgcgCCATGGCGGCTGGAGCCGACAGCGGTGCCGAGGCCAGTGCCACAGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCa < 1:675583/131‑1 (MQ=255) gcCATGGCGGCTGGAGCCGACAGCGGTGCCGAGGCCAGTGCCACAGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATGGTGACCCAGTTGCAGAATCTGGTGACGCTGAAGCCCg < 1:632287/235‑1 (MQ=255) cATGGCGGCTGGAGCCGACAGCGGTGCCGAGGCCAGTGCCACAGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATGGTGACCCAGTTGCAGAATCTGGTGACGCTGAAGCCCGATg < 1:652502/236‑1 (MQ=255) ggcTGGAGCCGACAGCGGTGCCGAGGCCAGTGCCACAGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATGGTGACCCAGTTGCAGCATCTGGTGa > 2:604062/1‑215 (MQ=255) gCCGACAGCGGTGCCGAGGCCAGTGCCACAGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATGGTGACCCAGTTGCAGAATCTGGTGACGCTGAAGCCCGATGCAGTTATTCacac > 1:585974/1‑236 (MQ=255) tGCCGAGGCCAGTGCCACAGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGggcg > 2:377173/1‑128 (MQ=255) gCCACAGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATTGTGACCCAGTTGCa > 1:49218/1‑173 (MQ=255) gCCACAGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATGGTGACCCAGTTGCAGAATCTGGTGACGCTGCAGCCCGATGCAGTTATTca > 1:664330/1‑209 (MQ=255) cacaGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATgg > 2:380853/1‑158 (MQ=255) aCCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTGCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATGGTg < 2:177388/154‑1 (MQ=255) tCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCaa < 2:334120/134‑1 (MQ=255) tCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCaa > 1:334121/1‑134 (MQ=255) gCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGcc < 2:480725/108‑1 (MQ=255) gcgcATCGACATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATGGTGACCCAGTTGCAGAATCAGGTGACGCTGAAGCCCGATGCAGtt > 1:415581/1‑178 (MQ=255) cgcATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCa < 2:283265/62‑1 (MQ=255) ccATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATGGTGACCCAGTTGCAGAATCTGGTGACGCTGAAGCCCGATGCAGTTATTCACACCCTCGGCACGCTGAGCATCATCGAGCCCTGGTTCAAGCGCa < 2:620244/219‑1 (MQ=255) aGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATGGTGACCCAGTTGCAGAATCTGGTGACGCTGAAGCCCGATGCAGTTATTCACACCCTCGGCACGCTGAGCATCATCGAGCCCTGGTTCAAGCGCATCAGcgccg < 1:211571/223‑1 (MQ=255) gTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAAcca > 2:6554/1‑102 (MQ=255) cACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATGGTGACCCAGTTGCAGAATCTGGTGACGCTGAAGCCCGATGCAGTTATTCACACCCTCGGCACGCTGAGCATCATCGAGCCCTGGTTCAAGCGCa > 2:377424/1‑203 (MQ=255) cTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATGGTGACCCAGTTGCAGAATCTGGTGACGCTGAAGCCCGATGCAGTTATTCACACCCTCGGCACGCTGAGCATCATCGAGCCCTGGTTCAAGCGCATCAGCGCCGCCGGCATc < 2:336792/211‑1 (MQ=255) cTACTTCGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATGGTGACCCAGTTGCAGAATCTGGTGACGCTGAAGCCCGATGCAGTTATTCACACCCTCGGCACGCTGAGCATCATCGAGCCCTGGTTCAAGCGCATCAGCGCCGCCGGCATc > 1:336793/1‑211 (MQ=255) cGACAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATGGTGACCCAGTTGCAGAATCTGGTGACGCTGAAGCCCGATGCAGTTATTCACACCCTCGGCACGCTGAGCATCATCGAGCCCTGGTTCAAGCGCATCAGCGCCGCCGGCATCCCGCTGTTCACCATCGAGGTGCCGt < 1:43875/230‑1 (MQ=255) aCAGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATGGTGACCCAGTTGCAGAATCTGGTGACGCTGAAGCCCGATGCAGTTATTCACACCCTCGGCACGCTGAGCATCATCGAGCCCTGGTTCAAGCGCATCAGCGCCGCCGGCATCCCGCTGTTCACCATCGAGGTGCCGTCGCAGt < 2:585973/234‑1 (MQ=255) aGCCGGGCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATGGTGACCCAGTTGCAGAATCTGGTGACGCTGAAGCCCGATGCAGTTATTCACACCCTCGGCACGCTGAGCATCATCGAGCCCTGGTTCAAGCGCATCAGCGCCGCCGGCATCCCGCTgg > 2:183034/1‑207 (MQ=255) ggCCTTCAAGGTGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATGGTGACCCAGTTGCAGAATCTGGTGACGCTGAAGCCCGATGCAGTTATTCACACCCTCGGCACGCTGAGCATCATCGAGCCCTGGTTCAAGCGCATCAGCGCCGCCGGCATCCCg < 1:135340/199‑1 (MQ=255) | CGAGGTGACCAATGAGTGACAACGACTGCTCCGGCATGTCCCGGCGCTGCCTGCTCGGCGCGTCCTCGGCGATGCTCGCTCTCGGGCTTGCCGCACCATTGACCCGCGCCATGGCGGCTGGAGCCGACAGCGGTGCCGAGGCCAGTGCCACAGTACCTTCGCTGAAGGGCAAGCGCATCGCCATCAGCACCGTGGGCACCAGCATCTACTTCGACAGCCGGGCCTTCAAGGCGCAGGTCGAGGAAGTACAGCGCCTGGGCGGCACGCCGATCACCTTGGATGCCGGGCGCAACGACAAGGCCATGGTGACCCAGTTGCAGAATCTGGTGACGCTGAAGCCCGATGCAGTTATTCACACCCTCGGCACGCTGAGCATCATCGAGCCCTGGTTCAAGCGCATCAGCGCCGCCGGCATCCCGCTGTTCACCATCGAGGTGCCGTCGCAGT > AE015451/3142041‑3142487 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |