New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	205652 =	93 (1.500)	6 (0.100)	6/328	NT	6.3%	coding (11158/26049 nt)	PP_0168	putative surface adhesion protein
	?	AE015451	207646 =	NA (NA)					coding (13152/26049 nt)	PP_0168	putative surface adhesion protein

CGGGGCAGTGACGGTAGCAGTGCCCACGGTGCCGTTGGCCGGCACGGTGATGACGGTTTTGCCGTCGCTCAGCGTGAAGGTCAATGCACTGTGGTTGTTGATCGGCAGACCGTCTTTGTTGGTCAGCGTGATGGTGTAAGTGATCTCGCCGCCTTCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/205810‑205652 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttcggtCACCGAAGGTGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCTAATGGCACCGTGGGTACTGCCACCGTGACTGCCCCGGACAACGTCTACGTTGGCACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGATGT  >  AE015451/207646‑207873                                                                                                                                                                                                                                                                                                                                                                                                     CGGGGCAGTCACGGTTGCAGTGCCCACGGTGCCGTTGGCCGGCACGGTGATGACGGTTTTGCCGTCGCTCAGCGTGAAGGTCAATGCACTGTGGTTGTTGATCGGCAGACCGTCTTTGTTGGTCAGCGTGATGGTGTAAGTGATCTCACCGCCTTCGGTCACCGAAGGCGGCG                                                                                                                                                                                                                        >  2:252078/1‑173                                           CACGGTGATGACGGTCTTGCCGTCGCTCAGCGTGAAGGTCAATGCACTGTGGTTGTTGATCGGCAGGCCGTCTTTGTTGGTCAGCGTGATGGTGTAAGTGATCTCACCGCCTTC                                                                                                                                                                                                                                         <  2:183659/114‑1                                                                 TCGCTCAGCGTGAAGGTCAATGCACTGTGGTTGTTGATTGGCAGACCCTCTTTGTTGGTCAGGGTGATGGTGTAGGTGATCTCGCCGCCTTCGGTTACCGAAGGCGGCGAGATCACCTACACCATCACCCTGA                                                                                                                                                                                                <  2:557288/133‑1                                                                                             GGTTGTTGATCGGCAGACCGTCTTTGTTGGTCAGCGTGATGGTGTAAGTGATCTCACCGCCTTCGGTCACCGAAGGTGGCGAGATCACTTACA                                                                                                                                                                                                            >  1:414613/1‑93                                                                                             GGTTGTTGATCGGCAGACCGTCTTTGTTGGTCAGCGTGATGGTGTAAGTGATCTCACCGCCTTCGGTCACCGAAGGTGGCGAGATCACTTACA                                                                                                                                                                                                            <  2:414612/93‑1                                                                                              GTTATTGATCGGCAGACCGTCTTTGTTGGTCAGGGTGATGGTGTAAGTGATCTCGCCGCCTTCGGT                                                                                                                                                                                                                                      <  2:1015581/66‑1                                                                                                                          GTCAGGGTGATGGTGTAAGTGATCTCGCCACCTTCGGTCACCGAAGGTGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCA                                                                                                                                 >  2:846408/1‑139                                                                                                                                  GATGGTGTAAGTGATCTCGCCACCTTCGGTCACCGAAGGTGGCGAGATCACTTACACAATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGT                                                                                                                          >  2:602983/1‑138                                                                                                                                                        cccTCGGTCACCGAAGGCGGCGAGATCACTTACACCATCACCCTGACCAACAAAGAAGGCCTGCCGATCAACAATCACAG                                                                                                                                                              >  2:649765/4‑80                                                                                                                                                        CCTTCGGTCACCGAAGGTGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCTAATGGCACCGTGGGTACTGCCACCGTGACTGCCCCGGACAACGTCTACGTTGGCACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGATGT  >  1:1088532/1‑236                                                                                                                                                        CCTTCGGTCACCGAAGGTGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCTAATGGCACCGTGGGTACTGCCACCGTGACTGCCCCGGACAACGTCTACGTTGGCACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGA     >  2:1024776/1‑233                                                                                                                                                        CCTTCGGTCACCGAAGGTGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCTAATGGCACCGTGGG                                                                                            <  1:756726/146‑1                                                                                                                                                        CCTTCGGTCACCGAAGGTGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCTAATGGCACCGTGGG                                                                                            >  2:756725/1‑146                                                                                                                                                        CCTTCGGTCACCGAAGGTGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAA                                                                                                                               >  1:1126123/1‑111                                                                                                                                                        CCTTCGGTCACCGAAGGTGGCGAGATCACTTACACCATCACC                                                                                                                                                                                                    <  2:807046/42‑1                                                                                                                                                            CGGTCACCGAAGGTGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCTAATGGCACCGTGGGTACTGCCACCGTGACTGCCCCGGACAACGTCTACGTTGGCACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGG      >  1:1065254/1‑228                                                                                                                                                              GTCACCGAAGGTGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAAC                                                                                                                                                                   <  2:868272/69‑1                                                                                                                                                               TCACCGAAGGCGGCGAGATCACCTACACCATCACCCTGACCAACAAAGACGGCCTGCCAATCAACCACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCTAATGGCACCGTGGGTACTGCCACCGTGACTGCCCCGGACAAC                                                                <  2:418225/167‑1                                                                                                                                                                                                                                                                                                                                                                                                     CGGGGCAGTGACGGTAGCAGTGCCCACGGTGCCGTTGGCCGGCACGGTGATGACGGTTTTGCCGTCGCTCAGCGTGAAGGTCAATGCACTGTGGTTGTTGATCGGCAGACCGTCTTTGTTGGTCAGCGTGATGGTGTAAGTGATCTCGCCGCCTTCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/205810‑205652 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttcggtCACCGAAGGTGGCGAGATCACTTACACCATCACCCTGACCAACAAAGACGGCCTGCCGATCAACAACCACAGTGCATTGACCTTCACGCTGAGCGACGGCAAAACCGTCATCACCGTGCCGGCTAATGGCACCGTGGGTACTGCCACCGTGACTGCCCCGGACAACGTCTACGTTGGCACCAACGACCCTGTGATCAAATCGATCGCAACCGTTGAAGGTGCGGATGT  >  AE015451/207646‑207873

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.