New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 61534347 (0.760)3 (0.050) 3/312 NT 6.7% coding (143/243 nt) xseB Exodeoxyribonuclease 7 small subunit
?AE015451 = 615327 41 (0.730)coding (159/243 nt) xseB Exodeoxyribonuclease 7 small subunit

TCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCCGGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/615129‑615343
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagggcgccctggcCCAGGCCGAACAGAAGGTGCAAATTCTGCTGGAGCGCGACGGCGAACTGGCTGCCCAACCCTTCGACGCGGAGCCGGAAGCATGATTGGCACCTACCAGGCCAGTTGCCAGGCGCGCGTCGACGCAGCCCTCGAACCGCTGTTCATCGCCCCGAGCAAAGAGCTGGAACGCCTTTACGCCGCCATGCGCTACAGCGTGATGAACGGCGGCAAACGCGTGCGCCCGTTGCTGGC  <  AE015451/615327‑615095
                                                                                                                                                                                                                                                                                                                                                                                                                                                                
TCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCCGGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCT                                                                                                                                                                                                                                              <  2:1108893/212‑1
                                                               GTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCCGGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGC                                                                                                                                                                                                                                                         <  2:670070/138‑1
                                                                                                     TGGTAGGTGCCACTCATGCTTCCGGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGCCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGCCCTGGGCCAGGGCGCCCTGGCCCAGGCCGAACAGAAGGTGCAAATTCTGCTGGAGCGCGACG                                                                                                                                                                                                  <  2:322672/155‑1
                                                                                                                                            GTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCCCAGGCCGAACAGAAGGTGCAAATTCTGCTGGAGCGCGACGGCGAACTGGCTGCCCAACCCTTCGACGCGGAGCCGGAAGCATGATTGGCACCTACCAGGCCAGTTGCCAGGCGCGCGTCGACGCAGCCCTC                                                                                                       <  1:1007479/207‑1
                                                                                                                                                        GTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGCCCATGCCGAACAGAAGGTGCAAATTCTGCTGGAGCGCGACGGCGAACTGGCTGCCCAACCCTTCGACGCGGAGCCGGAAGCATGATTGGCACCTACCAGGCCAGTTGC                                                                                                                               >  2:1007478/1‑171
                                                                                                                                                                                                          AGGGCGCCCTGGCCCAGGCCGAACAGAAGGTGCAAATTCTGCTGGAGCGCGACGGCGAACTGGCTGCCCAACCCTTCGACGCGGAGCCGGAAGCATGATTGGCACCTACCAGGCCAGTTGCCAGGCGCGCGTCGACGCAGCCCTCGAACCGCTGTTCATCGCCCCGAGCAAAGAGCTGGAACGCCTTTACGCCGCCATGCGCTCCAGCGTGATGAACGGCG                           >  1:153053/1‑221
                                                                                                                                                                                                           GGGCGCCCTGGCCCAGGCCGAACAGAAGGTGCAAATTCTGCTGGAGCGCGACGGCGAACTGGCTGCCCAACCCTTCGACGCGGAGCCGGAAGCATGATTGGCACCTACCAGGCCAGTTGCCAGGCGCGCGTCGACGCAGCCCTCGAACCGCTGTTCATCGCCCCGAGCAAAGAGCTGGAACGCCTTTACGCCGCCATGCGCTACAGCGTGATGAACGGCGGCAAACGCGTG                >  2:969657/1‑231
                                                                                                                                                                                                            GGCGCCCTGGCCCAGGCCGAACAGAAGGTGCAAATTCTGCTGGAGCGCGACGGCGAACTGGCTGCCCAACCCTTCGACGCGGAGCCGGAAGCATGATTGGCACCTACCAGGCCAGTTGCCAGGCGCGCGTCGACGCAGCCCTCGAACCGCTGTTCATCGCCCCGAGCACAGAGCTGGAACGCCTTTACGCCGCCAT                                                  >  1:790839/1‑196
                                                                                                                                                                                                                     GCCCAGGCCGAACAGAAGGTGCAAATTCTGCTGGAGCGCGACGGCGAACTGGCTGCCCAACCCTTCGACGCGGAGCCGGAAGCATGATTGGCACCTACCAGGCCAGTTGCCAGGCGCGCGTCGACGCAGCCCTCGAACCGCTGTTCATCGCCCCGAGCAAAGAGCTGGAACGCCTTTACGCCGCCATGCGCTACAGCGTGATGAACGGCGGCAAACGCGTGCGCCCGTTGCTGGC  >  1:1033648/1‑235
                                                                                                                                                                                                                                                                                                                                                                                                                                                                
TCACGCTGTAGCGCATGGCGGCGTAAAGGCGTTCCAGCTCTTTGCTCGGGGCGATGAACAGCGGTTCGAGGGCTGCGTCGACGCGCGCCTGGCAACTGGCCTGGTAGGTGCCAATCATGCTTCCGGCTCCGCGTCGAAGGGTTGGGCAGCCAGTTCGCCGTCGCGCTCCAGCAGAATTTGCACCTTCTGTTCGGCCTGGGCCAGGGCGCCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/615129‑615343
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccagggcgccctggcCCAGGCCGAACAGAAGGTGCAAATTCTGCTGGAGCGCGACGGCGAACTGGCTGCCCAACCCTTCGACGCGGAGCCGGAAGCATGATTGGCACCTACCAGGCCAGTTGCCAGGCGCGCGTCGACGCAGCCCTCGAACCGCTGTTCATCGCCCCGAGCAAAGAGCTGGAACGCCTTTACGCCGCCATGCGCTACAGCGTGATGAACGGCGGCAAACGCGTGCGCCCGTTGCTGGC  <  AE015451/615327‑615095

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.