| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | = 654184 | 57 (0.920) | 3 (0.050) | 3/330 | NT | 5.1% | coding (559/1962 nt) | ctpL | Methyl‑accepting chemotaxis protein CtpL |
| ? | AE015451 | = 654231 | 58 (0.980) | coding (512/1962 nt) | ctpL | Methyl‑accepting chemotaxis protein CtpL | |||||
TGCAGTTCGGCCGGGTAGCGGTTGAGCAGGCTTTGCAATTCACGCTTGAGGCCCACGGCAATGTCTTCCTGCTGGGCGCTGCTCTGGGATTCCAGGCCCATCATCGCAGCGAAGTCGTCGGCTCCGGATTCGGCCGTGCGGGTTACGCCGAGCAGTGGCAGGCCGTCGACCGTCTGGGCCTGGGCGCGGATCAGTTGCAGCTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/653979‑654184‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgcgACAAGCTGGTCAGCAGCGGCCGCCCAGAGCTGGCCGACGAGGTGGAGCGCGAGCTGCA < AE015451/654231‑654174 TGCAGTTCGGCCGGGTAGCGGTTGAGCAGGCTTTGCAATTCACGCTTGAGGCCCACGGCAATGTCTTCCTGCTGGGCGCTGCTCTGGGATTCCAGGCCCATCATCGCAGCGAAGTCGTCGGCTCCGGATTCGGCCGTGCGGGTTACGCCGAGCAGTGGCAGGCCGTCGACCGTCTGGGCCTGGGCGCGGATCAGTTGCAGCTCGCG > 2:1094130/1‑206TGCAGTTCGGCCGGGTAGCGGTTGAGCAGGCTTTGCAATTCACGCTTGAGGCCCACGGCAATGTCTTCCTGCTGGGCGCTGCTCTGGGATTCCAGGCCCATCATCGCAGCGAAGTCGTCGGCTCCGGATTCGGCCGTGCGGGTTACGCCGAGCAGTGGCAGGCCGTCGACCGTCTGGGCCTGGGCGCGGATCAGTTGCAGC > 1:1108642/1‑201TGCAGTTCGGCCGGGTAGCGGTTGAGCAGGCTTTGCAATTCACGCTTGAGGCCCACGGCAATGTCTTCCTGCTGGGCGCTGCTCTGGGATTCCAGGCCCATCATCGCAGCGAAGTCGTCGGCTCCGGATTCGGCCGTGCGGGTTACGCCGAGCAGTGGCAGGCCGTCGACCGTCTGGGCCTGGGCGCGGATCAGTTGCAGC < 2:1108641/201‑1 CAGGCCCATCGTCGCAGGGAAGTCGTCGGCTCCGGATTCGGCCGTGCGGGTTACGCCGAGCAGTGGCAGGCCGTCGACCGTCTGGGCCTGGGCGCGGATCAGTTGCAGCTCGCGACAAGCTGGTCAGCAGCGGCCGCCCAGAGCTGGCCGACGAGGTGGAGCGCGAGCTGCA < 1:709177/172‑1 GGCCCATCATCGCAGCGAAGTCGTCGGCTCCGGATTCGGCCGTGCGGGTTACGCCGAGCAGTGGCAGGCCGTCGACCGTCTGGGCCTGGGCGCGGATCAGTTGCAGCTCGCGACAAGCTGGTCAGCAGCGGCCGCCCAGAGCT < 1:463332/143‑1 GGCCCATCATCGCAGCGAAGTCGTCGGCTCCGGATTCGGCCGTGCGGGTTACGCCGAGCAGTGGCAGGCCGTCGACCGTCTGGGCCTGGGCGCGGATCAGTTGCAGCTCGCGACAAGCTGGTCAGCAGCGGCCGCCCAGAGCT > 2:463331/1‑143 TGCAGTTCGGCCGGGTAGCGGTTGAGCAGGCTTTGCAATTCACGCTTGAGGCCCACGGCAATGTCTTCCTGCTGGGCGCTGCTCTGGGATTCCAGGCCCATCATCGCAGCGAAGTCGTCGGCTCCGGATTCGGCCGTGCGGGTTACGCCGAGCAGTGGCAGGCCGTCGACCGTCTGGGCCTGGGCGCGGATCAGTTGCAGCTCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AE015451/653979‑654184‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctcgcgACAAGCTGGTCAGCAGCGGCCGCCCAGAGCTGGCCGACGAGGTGGAGCGCGAGCTGCA < AE015451/654231‑654174 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |