New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	923641 =	60 (0.970)	6 (0.110)	5/304	NT	10.3%	coding (1552/2169 nt)	PP_0804	Protein secretion ABC efflux system, permease and ATP‑binding protein
	?	AE015451	923661 =	52 (0.950)					coding (1532/2169 nt)	PP_0804	Protein secretion ABC efflux system, permease and ATP‑binding protein

ATGGCGCCGTTGGCCCAACTGACCCATGTGCTGACCCGCTGGCAGCAGGCCAAGGTCGCGCTGCAAGGCCTGGACAAGCTGATGCAGTCGCCGGTCGATCACCCCGAAGGCGAAGCCCGCGTGCACCTGCCGGCCATTCACGGCGAGTACCGCCTGCGCCAGGCCAACTTCCGCTACAGCGAAGACTACCCGCCAGTGCTGAACATTGGCCGGCTGGATATCCAGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/923869‑923641 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggctggatatccagccggCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCGGGCTTCGCCTTCGGGGTGATCGACCGGCGACTGCATCAGCTTGTCCAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGG  >  AE015451/923661‑923847                                                                                                                                                                                                                                                                                                                                                                                                                                  ATGGCGCCGTTGGCCCAACTGACCCATGTGCTGACCCGCTGGCAGCAGGCCAAGGTCGCGCTGCAAGGCCTGGACAAGCTGATGCAGTCGCCGGTCGATCACCCCGAAGGCGAAGCCCGCGTGCACCTGCCGGCCATTCACGGCGAGTACCGCCTGCGCCAGGCCAACTTCCGCTACAGCGAAGACTACCCGCCAGTGCTGAACATTGGCCGGCTGGATATC                                                                                                                                                                                                    <  2:1028264/222‑1                              GCTGACCCGCTGGCAGCAGGCCAAGGTCGCGCTGCAAGGCCTGGACAAGCTGATGCAGTCGCCGGTCGATCACCCCGAAGGCGAAGCCCGCGTGCACCTGCCGGCCATTCACGGCGAGTACCGCCTGCGCCAGGCCAACTTCCGCTACAGCGAAGACTACCCGCCAGTGCTGAACATTGGCCGGC                                                                                                                                                                                                            <  1:991703/185‑1                                          GCAGCAGGCCAAGGTCGCGCTGCAAGGCCTGGACAAGCTGATGCAGTCGCCGGTCGATCACCCCGAAGGCGAAGCCCGCGTGCACCTGCCGGCCATTCACGGCGAGTACCGCCTGCGCCAGGCCAACTTCCGCTACAGCGAAGACTACCCGCCAGTGCTGAACATTGGCCGGCTGGATATCCAGCCGG                                                                                                                                                                                             >  2:492006/1‑188                                                                                                                     CCGCGTGCACCTGCCGGCCATTCACGGCGAGTACCGCCTGCGCCAGGCCAACTTCCGCTACAGCGAAGACTACCCGCCAGTGCTGAACATTGGCCGGCTGGATATCCAGCCG                                                                                                                                                                                              <  1:1028079/112‑1                                                                                                                                               GCGAGTACCGCCTGCGCCAGGCCAACTTCCGCTACAGCGAAGACTACCCGCCAGTGCTGAACATTGGCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGG                                                                                                                                          <  2:717876/138‑1                                                                                                                                                                      AACTTCCGCTACAGCGAAGACTACCCGCCAGTGCTGAACATTGGCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGGAGTCTTCG                                                                                                                                                               >  1:609164/1‑94                                                                                                                                                                                         ACTACCCGCCAGTGCGGAACATTGGCCGGCTGCATATCCCGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGT                                                                                                                       <  1:1030415/115‑1                                                                                                                                                                                                 CCAGTGCTGAACATTGGCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTt                                                                                                                                                                >  1:214373/1‑65                                                                                                                                                                                                      GCTGAACATTGGCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCGGGCTTCGCCTTCGGGGTGATCGACCGGCGACTGCATCAGCTTGTCCAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGG  >  1:908290/1‑219                                                                                                                                                                                                      GCTGAACATTGGCCGGCTGGATATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGGCTTCGGTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCGGGCTTCGCCTTCGGG                                                                                  >  2:868109/1‑139                                                                                                                                                                                                                     GCTGGATATCCAGCCGGCCAATCTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCGGGCGC                                                                                                                                       <  2:871304/71‑1                                                                                                                                                                                                                            ATCCAGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCGGGCTTCGCCTTCGGGGTGATCGACCGGCGACTGCATCAGCTTGTCCAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCG                <  2:801718/183‑1                                                                                                                                                                                                                                AGCCGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCGGGCTTCGCCTTCGGGGTGATCGACCGGCGACTGCATCAGCTTGTCCAGG                                                <  2:992333/147‑1                                                                                                                                                                                                                                   CGGCCAATGTTCAGCACTGGCGGGTAGTCTTTGCTGTAACGGAAGTTGGCCCGGCGCAG                                                                                                                                     >  1:159564/1‑59                                                                                                                                                                                                                                   CGGCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACACGCCGTTAATGGCCGGCAGGTGCACGCGGGCTTCGCCTTCGGGGTGATCGACCGGCG                                                                    >  1:11212/1‑124                                                                                                                                                                                                                                                                                                                                                                                                                                  ATGGCGCCGTTGGCCCAACTGACCCATGTGCTGACCCGCTGGCAGCAGGCCAAGGTCGCGCTGCAAGGCCTGGACAAGCTGATGCAGTCGCCGGTCGATCACCCCGAAGGCGAAGCCCGCGTGCACCTGCCGGCCATTCACGGCGAGTACCGCCTGCGCCAGGCCAACTTCCGCTACAGCGAAGACTACCCGCCAGTGCTGAACATTGGCCGGCTGGATATCCAGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/923869‑923641 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggctggatatccagccggCCAATGTTCAGCACTGGCGGGTAGTCTTCGCTGTAGCGGAAGTTGGCCTGGCGCAGGCGGTACTCGCCGTGAATGGCCGGCAGGTGCACGCGGGCTTCGCCTTCGGGGTGATCGACCGGCGACTGCATCAGCTTGTCCAGGCCTTGCAGCGCGACCTTGGCCTGCTGCCAGCGGGTCAGCACATGGG  >  AE015451/923661‑923847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.