New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 112840653 (0.860)5 (0.090) 4/322 NT 9.0% coding (1145/2856 nt) gcvP‑I glycine dehydrogenase
?AE015451 = 1128424 51 (0.880)coding (1127/2856 nt) gcvP‑I glycine dehydrogenase

CAGCGACTCGACGTCAGCCTGAGTGCTGGTTTCGTCCAGAGACAGGCCCACATGGGCGGCATCGATCTGGCGCAGGTTGATGCCCTGGGCGCGTGCCTTGTCATGCAGGCTGGCGGTGGCAGTGCCGGTGGCCAGGGTCAGGGTATCGAAGGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1128249‑1128406
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaggcgctggGCGTACAAGTGGTGGGCGCCAGCGCCTTCGATACCCTGACCCTGGCCACCGGCACTGCCACCGCCAGCCTGCATGACAAGGCACGCGCCCAGGGCATCAACCTGCGCCAGATCGATGCCGCCCATGTGGGCCTGTCTCTGGACGA  <  AE015451/1128424‑1128280
                                                                                                                                                                                                                                                                                                               
CAGCGCCTCGACGTCAGCCTGAGTGCTGGTTTCGTCCAGAGACAGGCCCACATGGGCGGCATCGATCTGGCGCAGGTTGATGCCCTGGGCGCGTGCCTTGTCATGCAGGCTGGCGGTGGCAGTGCCGGTGGCCAGGGTCAGGGTATCGAAGGCG                                                                                                                                                       <  2:172881/154‑1
                                                                                            GTGCCTTGTCATGCAGGCTGGCGGTGGCAGTGCCGGTGGCCAGGGTCAGGGTATCGAAGGCG                                                                                                                                                       >  1:76502/1‑62
                                                                                                  TGTCATGCAGGCTGGCGGTGGCAGTGCCGGTGGCCAGGGTCAGGGTATCGAAGGCGCTGGGCGTACAAGTGGTGGGCGCCAGCGCCTTCGATACCCTGACCCTGGCCACCGGCACTGCCACCGCCAGCCTGCATGACAAGGCACGCGCCCAGGGCATCAACCTGCGCCAGATCGATGC                             <  1:490328/178‑1
                                                                                                               GGCGGTGGCAGTGCCGGTGGCCAGGGTCAGGGTATCGAAGGCGCCGGGCGTACAAGTGGTGGG                                                                                                                                   >  2:490327/1‑63
                                                                                                                             CGGTGGCCAGGGTCAGGGTATCGAAGGCGCTGGGCGTACAAGTGGTGGGCGCC                                                                                                                               <  1:822461/53‑1
                                                                                                                             CGGTGGCCAGGGTCAGGGTATCGAAGGCGCTGGGCGTACAAGTGGTGGGCGCC                                                                                                                               >  2:822460/1‑53
                                                                                                                                         TCAGGGGATCGAAGGCGCTGGGCGTACAAGTGGTGGGCGCCCGCGCCct                                                                                                                       >  2:223232/1‑47
                                                                                                                                                             GGCGTACAAGTGGTGGGCGCCAGCGCCTTCGATACCCTGACCCTGGCCACCGGCACTGCCACCGCCAGCCTGCATGCCAAGGCACGCGCCCAGGGCATCAACCTGCGCCAGACCGATGCCGCCCATGTGGGCCTGTCTCTGGCCGA  >  2:385246/1‑146
                                                                                                                                                                                                                                                                                                               
CAGCGACTCGACGTCAGCCTGAGTGCTGGTTTCGTCCAGAGACAGGCCCACATGGGCGGCATCGATCTGGCGCAGGTTGATGCCCTGGGCGCGTGCCTTGTCATGCAGGCTGGCGGTGGCAGTGCCGGTGGCCAGGGTCAGGGTATCGAAGGCGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/1128249‑1128406
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaggcgctggGCGTACAAGTGGTGGGCGCCAGCGCCTTCGATACCCTGACCCTGGCCACCGGCACTGCCACCGCCAGCCTGCATGACAAGGCACGCGCCCAGGGCATCAACCTGCGCCAGATCGATGCCGCCCATGTGGGCCTGTCTCTGGACGA  <  AE015451/1128424‑1128280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.