New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1296784 =	NA (NA)	19 (0.320)	14/330	NT	NA	intergenic (‑537/‑29)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA 1/transposase
	?	AE015451	1296822 =	NA (NA)					coding (10/1329 nt)	PP_1133	transposase

ACCCCCGTGGATTCCATGGCAACGACCTTGATCCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1297024‑1296784 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgcAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGATGGCTAACTGGCTTGAAAGCCTGGGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGC  >  AE015451/1296822‑1297055                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ACCCCCGTGGATTCCATGGCAACGACCTTGATCCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGG                                                                                                                                                                                                                                                  >  1:977017/1‑235   CCCCGTGGATTCCATGGCAACGACCTTGATCCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCG                                                                                                                                                                                                                                               <  1:95786/236‑1   CCCCGTGGATTCCATGGCAACGACCTTGATCCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCG                                                                                                                                                                                                                                               <  1:942784/236‑1   CCCCGTGGATTCCATGGCAACGACCTTGATCCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCG                                                                                                                                                                                                                                               <  1:915805/236‑1   CCCCGTGGATTCCATGGCAACGACCTTGATCCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCG                                                                                                                                                                                                                                               <  1:537882/236‑1   CCCCGTGGATTCCATGGCAACGACCTTGATCCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGC                                                                                                                                                                                                                                                <  1:1098237/235‑1    CCCGTGGATTCCATGGCAACGACCTTGATCCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCG                                                                                                                                                                                                                                               <  1:820335/235‑1      CGTGGATTCCATGGCAACGACCTTGATCCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCG                                                                                                                                                                                                                                               <  2:597633/233‑1         GGATTCCATGGCAACGACCTTGATCCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGG                                                                                                                                                                                                                                                 >  2:681742/1‑228         GGATTCCATGGCAACGACCTTGATCCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGG                                                                                                                                                                                                                                                 <  1:681743/228‑1           ATTCCATGGCAACGACCTTGATCCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGC                                                                                                                                                                                                                                        <  1:769730/235‑1           ATTCCATGGCAACGACCTTGATCCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGC                                                                                                                                                                                                                                                >  2:980611/1‑227                  GGCAACGACCTTGATCCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCG                                                                                                                                                                                                                                             >  1:399308/1‑223                   GCAACGACCTTGATCCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAG                                                                                                                                                                                                                                <  1:818190/235‑1                       CGACCTTGATCCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGC                                                                                                                                                                                                                                              <  1:11746/217‑1                           CTTGAACCCCAGGCTTACAAGCCAGTTAGCCATCTTGAGCGGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGC                                                                                                                                                                                                                                              <  1:276639/213‑1                            TTGATCCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGG                                                                                                                                                                                                                                                  >  1:310154/1‑208                                 CCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGT                                                                                                                                                                                                                  >  1:817761/1‑235                                  CCCAGGCTTTCAAGCCAGTTAGCCAGCTTGAGCAGGTCGTCAGTAAAGGCCGTGAACGACTGGACGGGATTGTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAA                                                                                                                                                                                                                                 <  1:111808/219‑1                                          TTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCTGGATAAAGGGCGCGCAAGCCTTCCAAG                                                                                                                                                                                                                                <  1:597696/212‑1                                               GCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGC                                                                                                                                                                                                                                              <  1:648678/193‑1                                                     TAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAGCAACGCTTTACCG                                                                                                                                                                                                                   >  1:554823/1‑214                                                     TAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGG                                                                                                                                                                                                                                                  >  1:407427/1‑183                                                      AGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGCCATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGC                                                                                                                                                                                                                                                >  1:861164/1‑184                                                           tgTTGAGCAGGTCGGCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCG                                                                                                                                                                                                                                               <  2:86060/178‑1                                                                          CAGGAAAGGACGTGAACGCCTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCGCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCG                                                                                                                                                                                                                                             <  2:34577/167‑1                                                                             TAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCGTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGG                                                                                                                                                                                                                                                  >  1:111874/1‑159                                                                                     GTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCG                                                                                                                                                                                                                                               >  2:477276/1‑154                                                                                       GAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGC                                                                                                                                                                                                                                                <  2:960977/151‑1                                                                                       GAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGC                                                                                                                                                                                                                                                >  1:960978/1‑151                                                                                         ctGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAGCAACGCTTT                                                                                                                                                                                                                       <  2:554822/172‑1                                                                                          CGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCCATCGGGATGGACGACGGTCAAGCGTTGCTTGGACGGCTTGCGCGCCATGATGAATCCTCGCCGGATAACGGGCGCG                                                                                                                                                                                                                                             >  2:35567/1‑151                                                                                                gcCGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAGCAAC                                                                                                                                                                                                                            <  1:266082/160‑1                                                                                                            ggGCCGGGGACCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAG                                                                                                                                                                                                                                <  1:244109/144‑1                                                                                                              GCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCC                                                                                                                                                                                                                                   <  1:289386/141‑1                                                                                                               CCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGC                                                                                                                                                                                                                                                <  2:60057/127‑1                                                                                                                 GGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCG                                                                                                                                                                                                                                               <  1:251901/126‑1                                                                                                                      TCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCG                                                                                                                                                                                                                                             <  1:380188/123‑1                                                                                                                       CGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCG                                                                                                                                                                                                                                               <  2:324233/120‑1                                                                                                                        gcCCGCCACGAAATGCTCTCGACCGCCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAG                                                                                                                                                                                                                                <  2:286578/132‑1                                                                                                                            GCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAG                                                                                                                                                                                                                                <  2:422522/130‑1                                                                                                                              CACGAAATGCCGTCGACCACCGAGATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGC                                                                                                                                                                                                                                              <  2:57453/114‑1                                                                                                                               cCGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGG                                                                                                                                                                                                                                                 <  2:375283/109‑1                                                                                                                                  AAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCG                                                                                                                                                                                               <  2:817760/157‑1                                                                                                                                            GACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGC                                                                                                                                                                                                                                                <  2:710299/98‑1                                                                                                                                             ACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCG                                                                                                                                                                                                                                             <  2:51685/100‑1                                                                                                                                              caacagaaATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGTAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGT                                                                                                                                                                             <  1:927328/155‑1                                                                                                                                                     CATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGC                                                                                                                                                                                                                                              <  2:1119277/91‑1                                                                                                                                                      ATCGATCGCCGCTCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGT                                                                                                                                                                                                               <  1:102263/121‑1                                                                                                                                                         GATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCC                                                                                                                                                                                                                                   <  2:290200/98‑1                                                                                                                                                            CGCCGCGCAAGCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCG                                                                                                                                                                                                                                               <  1:722135/83‑1                                                                                                                                                                      tcggtgTGGACGCCGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGA                                                                                                                                                                                       <  2:16876/123‑1                                                                                                                                                                                                              GCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGATGGCTAACTGGCTTGAAAGCCTGGGGATCAAGGTCGTTGCCATGGAATCCACGGG                                    <  1:274797/236‑1                                                                                                                                                                                                               CGCCATGATGAATCCTCGCAGGATAAAGGGCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGg                                                                                                                                                         >  2:274796/1‑117                                                                                                                                                                                                               CGCCAGGATGAATCCTCCCAGGATAAAGGGCGCGCGAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATC                                                                                                                                                                                         <  2:848566/86‑1                                                                                                                                                                                                                                         atgaCGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGATGGCTAACTGGCTTGAAAGCCTGGGGATCAAGGTCGTTGCCAT                                                <  2:886817/193‑1                                                                                                                                                                                                                                             CGCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGA                                                                                                         >  1:323919/1‑136                                                                                                                                                                                                                                              GCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCGGCTCAAGATGGCTAACTGGCTTGAAAGCCTGGGGATCAAGGTCG                                                       >  1:1013557/1‑185                                                                                                                                                                                                                                              GCGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGCCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGATGGCTAACTGGCTTGAAAGCCTGGG                                                                  >  1:1109928/1‑174                                                                                                                                                                                                                                               CGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTTGTGGCAATCAATCCCCGGCATGAAAA                                                                                                                                       >  2:954848/1‑104                                                                                                                                                                                                                                               CGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGcc                                                                                                                                                        >  2:336096/1‑85                                                                                                                                                                                                                                               CGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGG                                                                                                                                                          >  2:372209/1‑85                                                                                                                                                                                                                                               CGCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGA                                                                                                                                                                          >  2:375083/1‑69                                                                                                                                                                                                                                                GCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGATGGCTAACTGGCTTGAAAGCCTGGGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGC  <  1:422871/236‑1                                                                                                                                                                                                                                                GCAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTC                                                                                                                                <  2:274287/110‑1                                                                                                                                                                                                                                                 CAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGATGGCTAACTGGCTTGAAAGCCTGGGGATCAAGGTCGTTGCCATGTAATCCACGGGGGTTTATTGG                          >  1:829675/1‑211                                                                                                                                                                                                                                                 CAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGC                                                                                                                                                                                                  <  1:765487/43‑1                                                                                                                                                                                                                                                 CAAGCCTTCCAAGCAACGCTTT                                                                                                                                                                                                                       <  2:85501/22‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ACCCCCGTGGATTCCATGGCAACGACCTTGATCCCCAGGCTTTCAAGCCAGTTAGCCATCTTGAGCAGGTCGTCAGTAAAGGACGTGAACGACTGGACGGGATTTTCGTGCCGGGGATCGACCGCCACGAAATGCTCTCGACCACCGACATCGATCGCCGCGCAATCGGGATGGACGACGGTAAAGCGTTGCTTGGAAGGCTTGCGCGCCATGATGAATCCTCGCAGGATAAAGGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1297024‑1296784 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcgcAAGCCTTCCAAGCAACGCTTTACCGTCGTCCATCCCGATTGCGCGGCGATCGATGTCGGTGGTCGAGAGCATTTCGTGGCGGTCGATCCCCGGCACGAAAATCCCGTCCAGTCGTTCACGTCCTTTACTGACGACCTGCTCAAGATGGCTAACTGGCTTGAAAGCCTGGGGATCAAGGTCGTTGCCATGGAATCCACGGGGGTTTATTGGATTCCAATTTACGAGATTCTCAGC  >  AE015451/1296822‑1297055

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.