New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	1678612 =	76 (1.230)	5 (0.090)	4/326	NT	6.5%	intergenic (+94/+93)	PP_1473/PP_1474	conserved protein of unknown function/conserved exported protein of unknown function
	?	AE015451	1678640 =	72 (1.230)					intergenic (+122/+65)	PP_1473/PP_1474	conserved protein of unknown function/conserved exported protein of unknown function

GCCCACATCGACCAGTTGCTGCCTACACTGCGCCGGGATGTGTTGCCAGGGTTGTATGCCCGCTGGCTGGACCTGGCATTGCGAGAAGACTATCTACAGGAAAGCCGGCGTTTCTTTGAGGACAAATAAGCCCAACCCGTATGCACGGTCGTTGCAGAAGCAGACGGGGGATACGTGCCTGCCGAAAAAAGAAACCCCGGGCGCTGGGGAAGACGCCCGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1678833‑1678612 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccggggTTTCTTTTTTCGGCAGGCACGTATCCCCCGTCTGCTTCTGCAACGACCGTGCATACGGGTTGGGCTTATTTGTCCTCAAAGAAACGCCGGCTTTCCTGTAGATAGTCTTCTCGCAATGCCAGGTCCAGCCAGCGGGCATACAACCCTGGCAACACATCCCGGCGCAGTGTAGGCAGCAACTGGTCGATGTGGGCAACTGCCGCACGCCCCAGTTCGCTGTTTGAGCACCCC  >  AE015451/1678640‑1678870                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCCCACATCGACCAGTTGCTGCCTACACTGCGCCGGGATGTGTTGCCAGGGTTGTATGCCCGCTGGCTGGACCTGGCATTGCGAGAAGACTATCTACAGGAAAGCCGGCGTTTCTTTGAGGACAAATAAGCCCAACCCGTATGCACGGTCGTTGCAGAAGCAGACGGGGGATACGTGCCTGCCGAAAAAAGAAACCCCGGGCGCTGGGGAAGACGCCCGGGG                                                                                                                                                                                                                                         <  1:923558/222‑1         CGACCAGTTGCTGCCTACACTGCGCCGGGATGTGTTGCCAGGGTTGTATGCCCGCTGGCTGGACCTGGCATTGCGAGAAGACTATCTACAGGAAAGCCGGCGTTTCTTTGAGGACAAATAAGCCCAACCCGTATGCACGGTCGTTGCAGAAGCAGACGGGGGATACGTGCCTGCCGAAAAAAGAAACCCCGGGCGCTGGGGAAGACGCCCG                                                                                                                                                                                                                                            >  2:997512/1‑211             CAGTTGCTGCCTACACTGCGCCGGGATGTGTTGCCAGGGTTGTATGCCCGCTGGCTGGACCTGGCATTGCGAGAAGACTATCTACAGGAAAGCCGGCGTTTCTTTGAGGACAAATAAGCCCAACCCGTATGCACGGTCGTTGCAGAAGCAGACGGGGGATACGTGCCTGCCGAAAAAAGAAACCCCGGGCGCTGGGGAAGACGCCCGGGGTTTCTTTTTTCGGCAGGC                                                                                                                                                                                                                       <  2:686722/228‑1                gTGCTGCCTACACTGCGCCGGGATGTGTTGCCAGGGTTGTATGCCCGCTGGCTGGACCTGGCATTGCGAGAAGACTATCTACAGGAAAGCCGGCGTTTCTTTGAGGACAAATAAGCCCAACCCGTATGCACGGTCGTTGCAGAAGCAGACGGGGGATACGTGCCTGCCGAAAAAAGAAACCCCGGGCGCTGGGGAAGACGCCCGGG                                                                                                                                                                                                                                          <  1:382348/205‑1                                   GGGATGTGTTGCCAGGGTTGTATGCCCGCTGGCTGGACCTGGCATTGCGAGAAGACTATCTACAGGAAAGCCGGCGTTTCTTTGAGGACAAATAAGCCCAACCCGTATGCACGGTCGTTGCAGAAGCAGACGGGGGATACGTGCCTGCCGAAAAAAGAAACCCCGGGCGCTGGGGAAGACG                                                                                                                                                                                                                                                >  1:829777/1‑181                                   GGGATGTGTTGCCAGGGTTGTATGCCCGCTGGCTGGACCTGGCATTGCGAGAAGACTATCTACAGGAAAGCCGGCGTTTCTTTGAGGACAAATAAGCCCAACCCGTATGCACGGTCGTTGCAGAAGCAGACGGGGGATACGTGCCTGCCGAAAAAAGAAACCCCGGGCGCTGGGGAAGACG                                                                                                                                                                                                                                                <  2:829776/181‑1                                                                                                          CGGCGTTTCTTTGAGGACAAATAAGCCCAACCCGTATGCACGGTCGTTGCAGAAGCAGACGGGGGATACGTGCCTGCCGAAAAAAGAAACCCCGGGCGCTGGGGAAGGCGCCCGGGGTTTCTTTTTTCGGCAGGCACGTATCCCCCGTCTGCTTCTGCAACGACCGTGCATACGG                                                                                                                                                                               <  1:707806/175‑1                                                                                                          CGGCGTTTCTTTGAGGACAAATAAGCCCAACCCGTATGCACGGTCGTTGCAGAAGCAGACGGGGGATACGTGCCTGCCGAAAAAAGAAACCCCGGGCGCTGGGGAAGACGCCCGGGGTTTCTTTTTTCGGCAGGCACGTATCCCCCGTCTGCTTCTGCAACGACCGTGCATACGG                                                                                                                                                                               >  2:707805/1‑175                                                                                                                                                CACGGTCGTTGCAGAAGCAGGGGGGGGATCCGCGCCTGCCGAAAAAAGAAACCCCGGGCGCTGGGGAAGACGCCCGGGGTTTCTTTTTTCGGCAGGCACGTAT                                                                                                                                                                                                                 <  2:653971/103‑1                                                                                                                                                                                       CGAAAAAAGAAACCCCGGGCGCTGGGGAAGACGCCCGGGGTTTCTTTTTTCGGCAGGC                                                                                                                                                                                                                       <  2:171613/58‑1                                                                                                                                                                                                                      CGCCCGGGGTTTCTTTTTTCGGCAGGCACGTATCCCCCGTCTGCTTCTGCAACGACCGTGCATACGGGTTGGGCTTATTTGTCCTCAAAGAAACGCCGGCTTTCCTGTAGATAGTCTTCTCGCAATGCCAGGTCCAGCCAGCGGGCATACAACCCTGGCAACACATCCCGGCGCAGTGTAGGCAGCAACTGGTCGATGTGGGCAACTGCCGCACGCCCCAGTTCGCTGTTTGA         >  2:397295/1‑233                                                                                                                                                                                                                        CCCGGGTTTTCTTTTTTCGGCAGGCACGTATCCCCCGTCTGCTTCTGCAACGACCGTGCATACGGGTTGGGCTTATTTGTCCTCAAAGAAACGCCGGCTTTCCTGTAGATAGTCTTCTCGCAATGCCAGGTCCAGCCAGCGGGCATACAACCCTGGCAAC                                                                                <  1:311130/160‑1                                                                                                                                                                                                                         CCGGGGTTTCTTTTTTCGGCAGGCACGTATCCCCCGTCTGCTTCTGCAACGACCGTGCATACGGGTTGGGCTTATTTGTCCTCAAAGAAACGCCGGCTTTCCTGTAGATAGTCTTCTCGCAATGCCAGGTCCAGCCAGCGGGCATACAACCCTGGCAACACATCCCGGCGCAGTGTAGGCAGCAACTGGTCGATGTGGGCAACTGCCG                               >  1:562649/1‑208                                                                                                                                                                                                                         CCGGGGTTTCTTTTTTCGGCAGGCACGTATCCCCCGTCTGCTTCTGCAACGACCGTGCATACGGGTTGGGCTTATTTGTCCTCAAAGAAACGCCGGCTTTCCTGTAGATAGTCTTCTCGCAATGCCAGGTCCAGCCAGCGGGCATACAACCCTGGCAACACA                                                                             <  1:401922/162‑1                                                                                                                                                                                                                         CCGGGGTTTCTTTTTTCGGCAGGCACGTATCCCCCGTCTGCTTCTGCAACGACCGTGCATACGGGTTGGGCTTATTTGTCCTCAAAGAAACGCCGGCTTTCCTGTAGATAGTCTTCTCGCAATGCCAGGTCCAGCCAGCGGGCATACAACCCTGGCAACACA                                                                             >  2:401921/1‑162                                                                                                                                                                                                                          CGGGGTTTCTTTTTTCGGCAGGCACGTATCCCCCGTCTGCTTCTGCAACGACCGTGCATACGGGTTGGGCTTATTTGTCCTCAAAGAAACGCCGGCTTTCCTGTAGATAGTCTTCTCGCAATGCCAGGTCCAGCCAGCGGGCATACAACCCTGGCAACACATCCCGGCGCAGTGTAGGCAGCAACTGGTCGATGTGGGCAACTGCCGCACGCCCCAGTTCGCTGTTTGAGCACCCC  <  1:396877/236‑1                                                                                                                                                                                                                          CGGGGTTTCTTTTTTCGGCAGGCACGTATCCCCCGTCTGCTTCTGCAACGACCGTGCATACGGGTTGGGCTTATTTGTCCTCAAAGAAACGCCGGCTTTCCTGTAGATAGTCTTCTCGCAATGCCAGGTCCAGCCAGCGGGCATACAACCCTGGCAACACATCCCGGCGCAGTGTAGGCAGCAACTGGTCGATGTGGGCAACTGCCGCACGCCCCAGTTCGCTGTTTGAGCACC    <  1:545034/234‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCCCACATCGACCAGTTGCTGCCTACACTGCGCCGGGATGTGTTGCCAGGGTTGTATGCCCGCTGGCTGGACCTGGCATTGCGAGAAGACTATCTACAGGAAAGCCGGCGTTTCTTTGAGGACAAATAAGCCCAACCCGTATGCACGGTCGTTGCAGAAGCAGACGGGGGATACGTGCCTGCCGAAAAAAGAAACCCCGGGCGCTGGGGAAGACGCCCGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/1678833‑1678612 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcccggggTTTCTTTTTTCGGCAGGCACGTATCCCCCGTCTGCTTCTGCAACGACCGTGCATACGGGTTGGGCTTATTTGTCCTCAAAGAAACGCCGGCTTTCCTGTAGATAGTCTTCTCGCAATGCCAGGTCCAGCCAGCGGGCATACAACCCTGGCAACACATCCCGGCGCAGTGTAGGCAGCAACTGGTCGATGTGGGCAACTGCCGCACGCCCCAGTTCGCTGTTTGAGCACCCC  >  AE015451/1678640‑1678870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.