New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	2331342 =	57 (0.920)	3 (0.050)	3/326	NT	5.6%	coding (1695/1776 nt)	PP_2048	putative acyl‑CoA dehydrogenase
	?	AE015451	2331383 =	48 (0.820)					coding (1736/1776 nt)	PP_2048	putative acyl‑CoA dehydrogenase

CGATACCCGGGTCACTGATAATCAAAACACGCTTGGCACCGCGCTCACGGCACAGACCTGCAAGGCGCTGCACCGCGCCGGGTTCGCAGAGGATCTGCGCAGTGGTGGCAAAGCTGAAAGGCTGCATCGCACTCTCCTTGTTCGTGTGGTTTGCCGTGCGCTAGAACGCGAAATCGCTCGCCGGTAACGCCATCAGGCAATCCGCGCCACCCAGCAGGGCCTCGCGGTGAGCAGTGGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2331583‑2331342 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcgcggATTGCCTGATGGCGTTACCGGCGAGCGATTTCGCGTTCTAGCGCACGGCAAACCACACGAACAAGGAGAGTGCGATGCAGCCTTTCAGCTTTGCCACCACTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTTGCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATCGCCCGCCTTGGCATGCTCGATGACCTGCTGCCGG  >  AE015451/2331383‑2331616                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGATACCCGGGTCACTGATAATCAAAACACGCTTGGCACCGCGCTCACGGCACAGACCTGCAAGGCGCTGCACCGCGCCGGGTTCGCAGAGGATCTGCGCAGTGGTGGCAAAGCTGAAAGGCTGCATCGCACTCTCCTTGTTCGTGTGGTTTGCCGTGCGCTAGAACGCGAAATCGCTCGCCGGTAACGCCATCAGGCAATCCGCGCCACCCAGCAGGGCCTCGCGGTGAGCAGTG                                                                                                                                                                                                                                                  <  1:59816/236‑1   ATACCCGGGTCACTGATAATCAAAACACGCTTGGCACCGCGCTCACGGCACAGACCTGCAAGGCGCTGCACCGCGCCGGGTTCGCAGAGGATCTGCGCAGTGGTGGCAAAGCTGAAAGGCTGCATCGCACTCTCCTTGTTCGTGTGGTTTGCCGTGCGCTAGAACGCGAAATCGCTCGCCGGTAACGCCATCAGGCAATCCGCGCCACCCAGCAGGGCCTCGCGGTGAGCAGTGt                                                                                                                                                                                                                                                 >  2:511673/1‑234   ATACCCGGGTCACTGATAATCAAAACACGCTTGGCACCGCGCTCACGGCACAGACCTGCAAGGCGCTGCACCGCGCCGGGTTCGCAGAGGATCTGCGCAGTGGTGGCAAAGCTGAAAGGCTGCATCGCACTCTCCTTGTTCGTGTGGTTTGCCGTGCGCTAGAACGCGAAATCGCTCGCCGGTAACGCCATCAGGCAATCCGCGCCACCCAGCAGGGCCTCGCGGTGAGCAGTGG                                                                                                                                                                                                                                                 <  1:707298/235‑1   ATACCCGGGTCACTGATAATCAAAACACGCTTGGCACCGCGCTCACGGCACAGACCTGCAAGGCGCTGCACCGCGCCGGGTTCGCAGAGGATCTGCGCAGTGGTGGCAAAGCTGAAAGGCTGCATCGCACTCTCCTTGTTCGTGTGGTTTGCCGTGCGCTAGAACGCGAAATCGCTCGCCGGTAACGCCATCAGGCAATCCGCGCCACCCAGCAGGGCCTCGCGGTGAGCAGTGG                                                                                                                                                                                                                                                 >  1:940539/1‑235                             ACGCTTGGCACCGCGCTCACGGCACAGACCTGCAAGGCGCTGCACCGCGCCGGGTTCGCAGAGGATCTGCGCAGTGGTGGCAAAGCTGAAAGGCTGCATCGCACTCTCCTTGTTCGTGTGGTTTGCCGTGCGCTAGAACGCGAAATCGCTCGCCGGTAACGCCATCAGGCAATCCGCGCCACCCAGCAGGGCCTCGCGGTGAGCAGTGGC                                                                                                                                                                                                                                                >  1:556656/1‑210                                                                      GCACCGCGCCGGGTTCGCAGAGGATCTGCGCAGTGGTGGCAAAGCTGAAAGGCTGCATCGCACTCTCCTTGTTCGTGTGGTTTGCCGTGCGCTAGAACGCGAAATCGCTCGCCGGTAACGCCATCAGGCAATCCGCGCCACCCAGCAGGGCCTCGCGGTGAGCAGTG                                                                                                                                                                                                                                                  <  1:1051622/167‑1                                                                                                  CGCAGTGGTGGCAAAGCTGAAAGGCTGCATCGCACTCTCCTTGTTCGTGTGGTTTGCCGTGCGCTAGAACGCGAACTCGCTCGCCGGTAACGCCATCAGGCAATCCGCGCCACCCAGCAGGGCCTCGCGGTGAGCAGTG                                                                                                                                                                                                                                                  <  2:324822/139‑1                                                                                                                                                                     acCGCGAAATCGCTCGCCGGTAACGCCATCAGGCAATCCGCGCCACCCAGCAGGGCCTCGCGGTGAGCAGTGGCGCGGATTGCCTGATGGCGTTACCGGCGAGCGATTTCGCGTTCTAGCGCACGGCAAACCACACGAAC                                                                                                                                                                              <  2:866699/138‑1                                                                                                                                                                         ccAAATCTCTCGCCGGTAACGCCATCAGGCAATCCGCGCCACCCAGCAGGGCCTCGCGGTGAGCAGTGGCGCGGATTGCCTGATGGCGTTACCGGCGAGCGATTTCGCGTTCTA                                                                                                                                                                                                    <  2:199907/112‑1                                                                                                                                                                                                             CGCCACCCAGCAGGGCCTCGCGGTGAGCAGTGGCGCGGATGGCCTGATGGCGTTACCGGCGAGCGATTTCGCGTTCTAGCGCACGGCAAACC                                                                                                                                                                                      <  2:627585/92‑1                                                                                                                                                                                                                                          GTGGCGCGGATTGCCTGATGGCGTTACCGGCGAGCGATTTCGCGTTCTAGCGCACGGCAAACCACACGAACAAGGAGAGTGCGATGCAGCCTTTCAGCTTTGCCACCACTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTTGCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATCGCCCGCCTTGGCATGCTCGATGACCTG         <  1:1110215/236‑1                                                                                                                                                                                                                                                 GGATTGCCTGATGGCGTTACCGGCGAGCGATTTCGCGTTCTAGCGCACGGCAAACCACACGAACAAGGAGAGTGCGATGCAGCCTTTCAGCTTTGCCACCACTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTTGCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATCGCCCGCCTTGGCATGCTCGATGACCTGCTGCCGG  >  1:863008/1‑236                                                                                                                                                                                                                                                 GGATTGCCTGATGGCGTTACCGGCGAGCGATTTCGCGTTCTAGCGCACGGCAAACCACACGAACAAGGAGAGTGCGATGCAGCCTTTCAGCTTTGCCACCACTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTTGCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC                                    >  1:1019559/1‑202                                                                                                                                                                                                                                                 GGATTGCCTGATGGCGTTACCGGCGAGCGATTTCGCGTTCTAGCGCACGGCAAACCACACGAACAAGGAGAGTGCGATGCAGCCTTTCAGCTTTGCCACCACTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTTGCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATC                                    <  2:1019558/202‑1                                                                                                                                                                                                                                                 GGATTGCCTGATGGCGTTACCGGCGAGCGATTTCGCGTTCTAGCGCACGGCAAACCACACGAACAAGGAGAGTGCGATGCAGCCTTTCAGCTTTGCCACCACTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTTGCAGGGCTGTGCCGTGAGCGCGGTGCCAAGCGTGTT                                                            >  2:141551/1‑178                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGATACCCGGGTCACTGATAATCAAAACACGCTTGGCACCGCGCTCACGGCACAGACCTGCAAGGCGCTGCACCGCGCCGGGTTCGCAGAGGATCTGCGCAGTGGTGGCAAAGCTGAAAGGCTGCATCGCACTCTCCTTGTTCGTGTGGTTTGCCGTGCGCTAGAACGCGAAATCGCTCGCCGGTAACGCCATCAGGCAATCCGCGCCACCCAGCAGGGCCTCGCGGTGAGCAGTGGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/2331583‑2331342 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcgcggATTGCCTGATGGCGTTACCGGCGAGCGATTTCGCGTTCTAGCGCACGGCAAACCACACGAACAAGGAGAGTGCGATGCAGCCTTTCAGCTTTGCCACCACTGCGCAGATCCTCTGCGAACCCGGCGCGGTGCAGCGCCTTGCAGGTCTGTGCCGTGAGCGCGGTGCCAAGCGTGTTTTGATTATCAGTGACCCGGGTATCGCCCGCCTTGGCATGCTCGATGACCTGCTGCCGG  >  AE015451/2331383‑2331616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.