New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2612197	52 (0.840)	3 (0.050)	3/326	NT	5.3%	coding (1136/4710 nt)	PP_2287	Phage internal core protein
	?	AE015451	= 2612226	58 (0.990)					coding (1165/4710 nt)	PP_2287	Phage internal core protein

CTGCGATGGGCCTGGGCCTCGGGGCCATTGGCGGTAGCCTCGCTCACGTAGAGGGGCCGCTGGCTGAGGAAAACGCCCGCCTGGCCCAGTGGGGCCGCCAGGAGTCCAGCGGGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2612080‑2612197 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggggcgcaTGAGGCCCGAATCGGTAAGCTCCTTGATTTGCGCCCCGCTGGACTCCTGGCGGCCCCACTGGGCCAGGCGGGCGTTTTCCTCAGCCAGCGGCCCCTCTACGTGAGCGAGGCTACCGCCAATGGCCCCGAGGCCCAGGCCCATCGCAGCGGAGATGTACAGGTCGTCATCCGTGCGGAGCGGGTTGTATCGGTTCATCAGCGCGTCATAGCCCACGTTGGTCCCAGCCCCGACC  <  AE015451/2612226‑2611994                                                                                                                                                                                                                                                                                                                                                                 CTGCGATGGGCCTGGGCCTCGGGGCCATTGGCGGTAGCCTCGCTCACGCAGAGGGGCCGCGGGCTGAGGAAAACGCCCGCCTGGCCCAGTGGGGCCGCCAGGCGTCCAGCGGGG                                                                                                                                                                                                                                               >  2:1024469/1‑114                                                         CCGCTGGCTGAGGAAAACGCCCGCCTGGCCCAGTGGGGCCGCCAGGAGTCCAGCGGGGCGCATGAGGCCCGAATCGGTAAGCTCCTTGATTTGCGCCCCGCTGGACTCCTGGCGGCCCCACTGGGCCAGGCGGGCGTTTTCCTCAGCCAGCGGCCCCTCTACGTGAGCGAGGCTACCGCCAATGGCCCCGAGGCCCAGGCCCATCG                                                                                           >  1:1065700/1‑206                                                         CCGCTGGCTGAGGAAAACGCCCGCCTGGCCCAGTGGGGCCGCCAGGAGTCCAGCGGGGCGCATGAGGCCCGAATCGGTAAGCTCCTTGATTTGCGCCCCGCTGGACTCCTGGCGGCCCCACTGGGCCAGGCGGGCGTTTTCCTCAGCCAGCGGCCCCTCTACGTGAGCGAGGCTACCGCCAATGGCCCCGAGGCCCAGGCCCATCG                                                                                           <  2:1065699/206‑1                                                           GCTGGCTGAGGAAAACGCCCGCCTGGCCCAGTGGGGCCGCCAGGAGTCCAGCGGGGCGCATGAGGCCCGAATCGGTAAGCTCCTTGATTTGCGCCCCGCTGGACTCCTGGCGGCCCCACTGGGCCAGGCGGGCGTTTTCCTCAGCCAGCGGCCCCTCTAC                                                                                                                                       >  1:303756/1‑160                                                                                                              CGGGGCGCATGAGGCCCGAATCGGTAAGCTCCTTGATTTGCGCCCCGCTGGACTCCTGGCGGCCCCACTGGGCCAGGCGGGCGTTTTCCTCAGCCAGCGGCCCCTCTACGTGAGCGAGGCTACCGCCCATGGCCCCGAGGCCCcg                                                                                                   >  2:86636/1‑143                                                                                                               GGGGCGCATGAGGCCCGAATCGGTAAGCTCCTTGATTTGCGCCCCGCTGGCCTCCTGGCGGCCCCACTGGGCCACGCGGGCGTTTTCCTCAGCCAGCGGCCCCTCTCCGTGAGCGAGGCTACCGCCAATGGCCACGAGGCCCAGGCCCA                                                                                              <  2:784561/149‑1                                                                                                                GGGCGCATGAGGCCCGAATCGGTAAGCTCCTTGATTTGCGCCCCGCTGGACTCCTGGCGGCCCCACTGGGCCAGGCGGGCGTTTTCCTCAGCCAGCGGCCCCTCTACGTGAGCGAGGCTACCGCCAATGGCCCCGAGGCCCAGGCCCATCGCAGCGGAGATGTACAGGTCGTCATCCGTGCGGAGCGGGTTGTATCGGTTCATCAGCGCGTCATAGCCCACGTTGGTCCCAGCCCC      <  1:24236/236‑1                                                                                                                  GCGCATGAGGCCCGAATCGGTAAGCTCCTTGATTTGCGCCCCGCTGGACTCCTGGCGGCCCCACTGGGCCAGGCGGGCGTTTTCCTCAGCCAGCGGCCCCTCTACGTGAGCGAGGCTACCGCCAATGGCCCCGAGGCCCAGGCCCATCGCAGCGGAGATGTACAGGTCGTCATCCGTGCGGAGCGGGTTGTATCGGTTCATCAGCGCGTCATAGCCCACGTTGGTCCCAGCCCCGA    <  1:636872/236‑1                                                                                                                      ATGAGGCCCGAATCGGTAAGCTCCTTGATTTGCGCCCCGCTGGACTCCTGGCGGCCCCACTGGGCCAGGCGGGCGTTTTCCTCAGCCAGCGGCCCCTCTACGTGAGCGAGGCTACCGCCAATGGCCCCGAGGCCCAGGCCCATCGCAGCGGAGATGTACAGGTCGTCATCCGTGCGGAGCGGGTTGTATCGGTTCATCAGCGCGTCATAGCCCACGTTGGTCCCAGCCCCGACC  >  2:720635/1‑234                                                                                                                                                                                                                                                                                                                                                                 CTGCGATGGGCCTGGGCCTCGGGGCCATTGGCGGTAGCCTCGCTCACGTAGAGGGGCCGCTGGCTGAGGAAAACGCCCGCCTGGCCCAGTGGGGCCGCCAGGAGTCCAGCGGGGCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2612080‑2612197 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggggcgcaTGAGGCCCGAATCGGTAAGCTCCTTGATTTGCGCCCCGCTGGACTCCTGGCGGCCCCACTGGGCCAGGCGGGCGTTTTCCTCAGCCAGCGGCCCCTCTACGTGAGCGAGGCTACCGCCAATGGCCCCGAGGCCCAGGCCCATCGCAGCGGAGATGTACAGGTCGTCATCCGTGCGGAGCGGGTTGTATCGGTTCATCAGCGCGTCATAGCCCACGTTGGTCCCAGCCCCGACC  <  AE015451/2612226‑2611994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.