New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 2643724	56 (0.910)	7 (0.120)	6/330	NT	10.8%	intergenic (+30/‑219)	PP_2313/PP_2314	conserved membrane protein of unknown function/conserved protein of unknown function
	?	AE015451	= 2643759	62 (1.040)					intergenic (+65/‑184)	PP_2313/PP_2314	conserved membrane protein of unknown function/conserved protein of unknown function

GGCCCTGGCGCTGACGGTGACCTTGATAGTGGCGATCGTTTCGGTGCACATCGGCAACGGCCTGTTCATGTCCAACAACGGCTATGAGTTCGCCCTGGCGCTGTTGGCCGGCACCGTTGCAGTCATGATCGAAGGCGCTGGCCGCTTCTCGCTCGACCGCCTGATCGCCCGGTAATCAGCTGCACGCTGTGTGCTACGAGCCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2643520‑2643724 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccgcaAGCAAGAACAAGCCGAGTATTGGCCTGCGCTTGCCTGCGGCTCGTAGCACACAGCGTGCAGCTGATTACCGGGCGATCAGGCGGTCGAGCGAGAAGCGGCCAGCGCCTTCGATCATGACTGCAACGGTGCCGGCCAACAGCGCCAGGGCGAACTCATAGCCGTTGTTGGACATGAACAGGCCGTTGCCGATGTGCACCGAAACGATCGCCACTATCAAGGT  <  AE015451/2643759‑2643539                                                                                                                                                                                                                                                                                                                                                                                                                                            GGCCCTGGCGCTGACGGTGACCTTGATAGTGGCGATCGTTTCGGTGCACATCGGCAACGGCCTGTTCATGTCCAACAACGGCTATGAGTTCGCCCTGGCGCTGTTGGCCGGCACCGTTGCAGTCATGATCGAAGGCGCTGGCCGCTTCTCGCTCGACCGCCTGATCGCCCGGTAATCAGCTGCACGCTGTGTGCTACGAGCCGCAAGCAAGAACAAGCCGA                                                                                                                                                                                                               <  2:780762/221‑1   CCCTGGCGCTGACGGTGACCTTGATAGTGGCGATCGTTTCGGTGCACATCGGCAACGGCCTGTTCATGTCCAACAACGGCTATGAGTTCGCCCTGGCGCTGTTGGCCGGCACCGTTGCAGTCATGATCGAAGGCGCTGGCCGCTTCTCGCTCGACCGCCTGATCGCCCGGTAATCAGCTGCACGCTGTGTGCTACGAGCCG                                                                                                                                                                                                                                 >  1:901770/1‑201                                   ATCGTTTCGGTGCACATCGGCAACGGCCTGTTCATGTCCAACAACGGCTATGAGTTCGCCCTGGCGCTGTTGGCCGGCACCGTTGCAGTCATGAGCGAAGGCGCTGGCCGCTTCTCGCTCGACCGCCTGATCGCCCGGTAATCAGCTGCACGCTGTGTGCTACGA                                                                                                                                                                                                                                     >  1:698370/1‑165                                             TGCACATCGGCAACGGCCTGTTCATGTCCAACAACGGCTATGAGTTCGCCCTGGCGCTGTTGGCCGGCACCGTTGCAGTCATGATCGAAGGCGCTGGCCGCTTCTCGCTCGACCGCCTGATCGCCCGGTAATCAGCTGCACGCTGTGTGCTACGAGCCGCAAGCAAGAACAAGCCGAGTATTGGCCTGCGCTTGCCTGCGGCTCGTAGCACACAGC                                                                                                                                                                        <  1:71938/216‑1                                                                                                           GCCGGCACCGTTGCAGTCATGATCGAAGGCGCTGGCCGCTTCTCGCTCGACCGCCTGATCGCCCGGTAATCAGCTGCACGCTGTGTGCTACGAGCCG                                                                                                                                                                                                                                 >  1:687146/1‑97                                                                                                                         AGTCATGATCGAAGGCGCTGGCCGCTTCTCGCTCGCCCGCCTGATCGCCCGGTAATCAGCTGCCCGCTGTGTGCTACGAGCCGCAAGCAAGAACAAGCCGA                                                                                                                                                                                                               <  2:231444/101‑1                                                                                                                                                 CTTCTCGCTCGACCGCCTGATCGCCCGGTAATCAGCTGCACGCTGTGTGCTACGAGCCGCAAGCAAGAACAAGCCGAGTATTGGCCTGCGCTTGCCT                                                                                                                                                                                           <  2:687145/97‑1                                                                                                                                                               GCCTGATCGCCCGGTAATCAGCTGCACGCTGTGTGCTACGAGCCGCAAGCAAGAACAAGCCGAGTAGTGGCCTGCGCTTGCCTGCGGCTCGGAGCACACAGCGTGCCGCTGACTACCG                                                                                                                                                        >  2:758687/1‑118                                                                                                                                                                  TGATCGCCCGGTAATCAGCTGCACGCTGTGTGCTACGAGCCGCAAGCAAGAACAAGCCGAGTATTGGCCTGCGCTTGCCTGCGGCTCGT                                                                                                                                                                                  >  2:437314/1‑89                                                                                                                                                                                               GTGCTACGAGCCGCAAGCAAGAACAAGCCGAGTATTGGCCTGCGCTTGCCTGCGGCTCGTAGCACACAGCGTGCAGCTGATTACCGGGCGATCAGGCGGTCGAGCGAGAAGCGGCCAGCGCCTTCGATCATGACTGCAACGGTGCCGGCCAACAGCGCCAGGGCGAACTCATAGCCGTTGTTGGACATGAACAGGCCGTTGCCGATGTGCACCGAAACGATCGCCACTATCAAGGT  >  1:962142/1‑236                                                                                                                                                                                                        GCCGCAAGCAAGAACAAGCCGAGTATTGGCCTGCGCTTGCCTGCGGCTCGTAGCACACAGCGTGCAGCTGATTACCGGGCGATCAGGCGGTCGAGCGAGAAGCGGCCAGCGCCTTCGATCATGACTGCAACGGTGCCGGCCAACAGCGCCAGGGCGAACTCATAGCCGTTGTTGGACAT                                                  <  2:822600/179‑1                                                                                                                                                                                                         CCGCAAGCAAGAACAAGCCGAGTATTGGCCTGCGCTTGCCTGCGGCTCGTAGCACACAGCGTGCAGCTGATTACCGGGCGATCAGGCGGTCGAGCGAGAAGCGGCCAGCGCCTTCGATCATGACTGCAACGGTGCCGGCCAACAGCGCCAGGGCGAACTCATAGCCGTTGTTGGACATGAACAGGCCGTTGCCGATGTGCACCGAAACGATCGC              >  1:1096759/1‑214                                                                                                                                                                                                             AAGCAAGAACAAGCCGAGTATTGGCCTGCGCTTGCCTGCGGCTCGTAGCACACAGCGTGCAGCTGATTACCGGGCTATCAGGCGGTCGAGCGAGACGCGGCCAGCGC                                                                                                                     >  2:21897/1‑107                                                                                                                                                                                                                                                                                                                                                                                                                                            GGCCCTGGCGCTGACGGTGACCTTGATAGTGGCGATCGTTTCGGTGCACATCGGCAACGGCCTGTTCATGTCCAACAACGGCTATGAGTTCGCCCTGGCGCTGTTGGCCGGCACCGTTGCAGTCATGATCGAAGGCGCTGGCCGCTTCTCGCTCGACCGCCTGATCGCCCGGTAATCAGCTGCACGCTGTGTGCTACGAGCCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/2643520‑2643724 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccgcaAGCAAGAACAAGCCGAGTATTGGCCTGCGCTTGCCTGCGGCTCGTAGCACACAGCGTGCAGCTGATTACCGGGCGATCAGGCGGTCGAGCGAGAAGCGGCCAGCGCCTTCGATCATGACTGCAACGGTGCCGGCCAACAGCGCCAGGGCGAACTCATAGCCGTTGTTGGACATGAACAGGCCGTTGCCGATGTGCACCGAAACGATCGCCACTATCAAGGT  <  AE015451/2643759‑2643539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.