New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3283058	67 (1.080)	6 (0.100)	6/326	NT	8.9%	coding (1167/1230 nt)	PP_2885	putative Transporter
	?	AE015451	= 3283150	59 (1.010)					coding (1075/1230 nt)	PP_2885	putative Transporter

CGAATTGGTCAGCCCGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCACGCACCAGTTTGAGTCGCGTCCCCGTGTCCATAGCCGCCTTGTAATCAGAGGTGTCAATAATAATGAGCGATGCGCATTAAAACACACTCTGCGCCCTTGCGCGCTGTGCTTCTCAAACCCGCTGCTCACGCGGCATTGGCCACAGCCCGACCAGCAGCAACAGCACGGCCACGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3282824‑3283058 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccacggccGGTTCCATTGGCGCCGCCCAAGGCATGGGCGCGGTGATCGGGCCGCTCGCCGGTACCTTGGTGTATGCCCTTGATCCGCGCTTGCCATTCCTGGCCGTGGCCGTGCTGTTGCTGCTGGTCGGGCTGTGGCCAATGCCGCGTGAGCAGCGGGTTTGAGAAGCACAGCGCGCAAGGGCGCAGAGTGTGTTTTAATGCGCATCGCTCATTATTATTGACACCTCTGATTAC  <  AE015451/3283150‑3282923                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGAATTGGTCAGCCCGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCACGCACCAGTTTGAGTCGCGTCCCCGTGTCCATAGCCGCCTTGTAATCAGAGGTGTCAATAATAATGAGCGATGCGCATTAAAACACACTCTGCGCCCTTGCGCGCTGTGCTTCTCAAACCCGCTGCTCACGCGGCATTGGCCACAGCCCGACCAGCAGCAACACCACGGCCACGGC                                                                                                                                                                                                                                       >  1:129374/1‑234                                                               CCAGTTTGAGTCGCGTCCCCGTGTCCATAGCCGCCTTGTAATCAGAGGTGTCAATAATAATGAGCGATGCGCATTAAAACACACTCTGCGCCCTTGCGCGCTGTGCTTCTCAAACCCGCTGCTCACGCGGCATTGGCCACAGCCCGACCAGCAGCAACAGCACGGCCAC                                                                                                                                                                                                                                          <  2:641935/169‑1                                                                                                                                         TAAAACACACTCTGCGCCCTTGCGCGCTGTGCTTCTCAAACCCGCTGCTCACGCGGCATTGGCCACAGCCCGACCAGCAGCAACAGCACGGCCAC                                                                                                                                                                                                                                          >  2:875677/1‑95                                                                                                                                         TAAAACACACTCTGCGCCCTTGCGCGCTGTGCTTCTCAAACCCGCTGCTCACGCGGCATTGGCCACAGCCCGACCAGCAGCAACAGCACGGCCAC                                                                                                                                                                                                                                          <  1:875678/95‑1                                                                                                                                                                  GCTGTGCTTCTCAAACCCGCTGCTCACGCGGCATTGGCCACAGCCCGACCAGCAGCAACAGCACGGCCACGGCCGGTTCCATTGGCGCCGCCCAAGGCATGGGCGCGGTGATCGGGCCGCTCGCCGGTACCTTGGGGTATGCCCTTGATCCGCGCTTG                                                                                                                                                  >  1:76748/1‑158                                                                                                                                                                    TGTGCTTCTCAAACCCGCTGCTCACGCGGCATTGGCCACAGCCCGACCAGCAGCAACAGCACGGCCACGGCCGGTTCCATTGGCGCCGCCCAAGGCATGGGCGCGGTGATCGGGCCGCTCGCCGGTACCTTGGTGTATGCCCTTGATCCGCGCTTGCCATTCCTGGCCGTGGCCGT                                                                                                                              >  1:584092/1‑176                                                                                                                                                                         TTCTCAAACCCGCTGCTCACGCGGCATTGGCCACAGCCCGACCAGCAGCAACAG‑‑‑‑‑‑CACGGCCGGTTCCGTTGGCGCCGCCCAAGGCATGGGCGCGGTGATCGGGCCGCTCGCCGGTGCCTT                                                                                                                                                                           >  1:825087/1‑120                                                                                                                                                                                 CCCGCTGCTCACGCGGCATTGGCCACAGCCCGACCAGCAGCAACAGCACGGCCACGGCCGGTTCCATTGGCGCCGCCCAAGGCATGGGCGCGGTGATCGGGCCGCTCGCCGGg                                                                                                                                                                                >  1:210494/1‑112                                                                                                                                                                                                                   CAGCAGCAACAGCACGGCCACGGCCGGTTCCATTGGCGCCGCCCAAGGCATGGGCGCGGGGATCGGGCCGCTCGCCGGGACCTTGGGGTATACCCTTGATCCGCGCTTGCCATTCCTGGCCGTGGCCGTGCTGGTGCTGCTGGTCGGGCTGTGGCCAATGCCGCGTG                                                                                        >  1:342998/1‑167                                                                                                                                                                                                                          AACAGCACGGCCACGGCCGGTTCCATTGGCGCCGCCCAAGGCATGGGCGCGGTGATCGGGCCGCTCGCCGGTACCTTGGTGTATGCCCTTGATCCGCGCTTGCCATTCCTGGCCGTGGCCGTGCTGTTGCTGCTGGTCGGGCTGTGGCCAATGCCGCGTGAGCAGCGGGTTTGAGAAGCACAGCGCGCAAGGGCGCAGAGTGTGTTTTAATGCGCATCGCTCATTATTATTGACAC            >  1:1130141/1‑236                                                                                                                                                                                                                                   GCCACGGCCGGTTCCATTGGCGCCGCCCAAGGCATGGGCGCGGTGATCGGGCCGCTCGCCGGTACCTTGGTGTATGCCCTTGATCCGCGCTTGCCATTCCTGGCCGTGGCCGTGCTGTTGCTGCTGGTCGGGCTGTGGCCAATGCCGCGTGAGCAGCG                                                                                 <  2:189263/158‑1                                                                                                                                                                                                                                   GCCACGGCCGGTTCCATTGGCGCCGCCCAAGGCATGGGCGCGGTGATCGGGCCGCTCGCCGGTACCTTGGTGTATGCCCTTGATCCGCGCTTGCCATTCCTGGCCGTGGCCGTGCTGTTGCTGCTGGTCGGGCTGTGGCCAATGCCGCGTGAGCAGCG                                                                                 >  1:189263/1‑158                                                                                                                                                                                                                                   GCCACGGCCGGTTCCATTGGCGCCGCCCAAGGCATGGGCGCGGTGATCGGGCCGCTCGCCGGTACCTTGGTGTATGCCCTTGATCCGCGCTTGCCATTCCTGGCCGTGGCCGTGCTGTTGCTGCTGGTCGGGCTGTGGCCAATGCCGCG                                                                                          >  2:27731/1‑149                                                                                                                                                                                                                                    CCACGGCCGGTTCCATTGGCGCCGCCCAAGGCATGGGCGCGGTGATCGGGCCGCTCGCCGGTACCTTGGTGTATGCCCTTGATCCGCGCTTGCCATTCCTGGCCGTGGCCGTGCTGTTGCTGCTGGTCGGGCTGTGGCCAATGCCGCGTGAGCAGCGGGTTTGAGAAGCACAGCGCGCAAGGGCGCAGAGTGTGTTTTAATGCGCATCGCTCATTATTATTGACACCTCTGATTAC  >  1:399155/1‑236                                                                                                                                                                                                                                    CCACGGCCGGTTCCATTGGCGCCGCCCAAGGCATGGGCGCGGTGATCGGGCCGCTCGCCGGTACCTTGGTGTATGCCCTTGATCCGCGCTTGCCATTCCTGGCCGTGGCCGTGCTGTTGCTGCTGGTCGGGCTGTGGCCAATGCCGCGTGAGCAGCGG                                                                                >  1:111707/1‑158                                                                                                                                                                                                                                         GCCGGTGCCATTGGCGCCGCCCAGGGCATGGGCGCGGTGATCGGGCCGCTCGCCGGTACCTTGGTGTATGCCCTTGATCCGCGCTTGCCATTCCTGGCCGTGGCCGTGCTGTTGCTGCTGGTCGGGCTGTGGCCAATGCCGCGTGAGCAGCG                                                                                 <  2:240081/152‑1                                                                                                                                                                                                                                          CCGGTTCCATTGGCGCCGCCCAAGGCATGGGCGCGGTGATCGGGC                                                                                                                                                                                           >  2:818565/1‑45                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGAATTGGTCAGCCCGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCACGCACCAGTTTGAGTCGCGTCCCCGTGTCCATAGCCGCCTTGTAATCAGAGGTGTCAATAATAATGAGCGATGCGCATTAAAACACACTCTGCGCCCTTGCGCGCTGTGCTTCTCAAACCCGCTGCTCACGCGGCATTGGCCACAGCCCGACCAGCAGCAACAGCACGGCCACGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3282824‑3283058 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccacggccGGTTCCATTGGCGCCGCCCAAGGCATGGGCGCGGTGATCGGGCCGCTCGCCGGTACCTTGGTGTATGCCCTTGATCCGCGCTTGCCATTCCTGGCCGTGGCCGTGCTGTTGCTGCTGGTCGGGCTGTGGCCAATGCCGCGTGAGCAGCGGGTTTGAGAAGCACAGCGCGCAAGGGCGCAGAGTGTGTTTTAATGCGCATCGCTCATTATTATTGACACCTCTGATTAC  <  AE015451/3283150‑3282923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.