New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3398276 =	62 (1.000)	4 (0.070)	4/326	NT	6.0%	coding (757/819 nt)	PP_3002	shikimate dehydrogenase‑related enzyme
	?	AE015451	3398411 =	67 (1.140)					coding (69/438 nt)	aroQ‑III	3‑dehydroquinate dehydratase 3, type II

CTCGCCCAGGGCCTGTAACGCCTGGTCGATGTCGGCCAGGGTCGCTGTGCCGTACTGGCGCGGGTCGCGCTTGCCGAACATGTTGTGGTTGATGCCATGCAGCATCAGTACATTGGCGACCATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3398465‑3398276 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgccaGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGG  >  AE015451/3398411‑3398634                                                                                                                                                                                                                                                                                                                                                                                                                                CTCGCCCAGGGCCTGTAACGCCTGGTCGATGTCGGCCAGGGTCGCTGTGCCGTACTGGCGCGGGTCGCGCGTGCCGAACATGTTGTGGTTGATGCCATGCAGCATCAGTACATTGGCGACCATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCG                                                                                                                                                                                                                                       <  2:116041/185‑1                                                                                                                        CCATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGG                                                                                            >  1:1050373/1‑205                                                                                                                          ATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAA                                                                   >  2:719237/1‑228                                                                                                                                 TACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGAC                                                    >  1:690202/1‑236                                                                                                                                                                          GTCGGGCCGCACCCCGCGCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGGGGATGCCGTGCTGATCAATGCCGGTGCCTGGACC                                                   >  2:143949/1‑196                                                                                                                                                                                           GCCAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCGTGATGCGTTGGCC                  >  2:483835/1‑212                                                                                                                                                                                            CCAGTACGGCACAGCGACCCTGGCAGACATCGAC                                                                                                                                                                                                   <  2:75767/34‑1                                                                                                                                                                                             CAGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACC                                                   <  1:61746/177‑1                                                                                                                                                                                              AGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGATCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCC                                                               >  1:356475/1‑164                                                                                                                                                                                              AGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGG  <  2:915531/225‑1                                                                                                                                                                                                                                                                                                                                                                                                                                CTCGCCCAGGGCCTGTAACGCCTGGTCGATGTCGGCCAGGGTCGCTGTGCCGTACTGGCGCGGGTCGCGCTTGCCGAACATGTTGTGGTTGATGCCATGCAGCATCAGTACATTGGCGACCATCGACCTACTCCAAGGGAATCGTCAGCTGATTGATCACCGCACGTGTGTCGGGCCGCACCCCGCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3398465‑3398276 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccgcgccaGTACGGCACAGCGACCCTGGCCGACATCGACCAGGCGTTACAGGCCCTGGGCGAGGAGCTGGGGGCACAGGTCGAGAGCTTCCAGAGCAACTTCGAGGGCGCCATGTGCGAGCGCATCCATCAGGCCTATGAGGACCGGGTGGATGCCGTGCTGATCAATGCCGGTGCCTGGACCCATTACAGCTACGGCATTCGTGATGCGTTGGCCATTATCGAAGTGCCGG  >  AE015451/3398411‑3398634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.