New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 365546945 (0.730)6 (0.100) 6/324 NT 11.0% coding (924/1620 nt) PP_3220 ABC transporter, ATP‑binding protein
?AE015451 = 3655515 55 (0.940)coding (878/1620 nt) PP_3220 ABC transporter, ATP‑binding protein

GAGCGCGGCGAACGGGTTTTGCTGCACCAGCTGGATACGCCGGCGCAAGGGGCGGAACTGGCTCCAGGTGTAACCGGTGACGTCCTCGCCGGCGAACACCACCTGCCCTTGACTGGGCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3655271‑3655469
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcccggcaAAAACGAGCATTACACTGCCCTGCACGACCTGAGCCTTGAACTGCATGCCGGGCAGACCCTGGCGATTGTCGGCGAATCCGGCTCGGGCAAGAGCACCGCCCTGCGCATCGCCCTGGGCCTGGAGAAGCCCAGTCAAGGGCAGGTGGTGTTCGCCGGCGAGGACGTCACCGGTTACACCTGGAGCCAGTTCCGCCCCTTGCGCCGGCGTA  <  AE015451/3655515‑3655306
                                                                                                                                                                                                                                                                                                                                                                                                                         
GAGCGCGGCGAACGGGTTTTGCTGCACCAGCTGGATACGCCGGCGCAAGGGGCGGAACTGGCTCCAGGTGTAACCGGTGACGTCCTCGCCGGCGAACACCACCTGCCCTTGACTGGGCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCGCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCC                                                                                                                                                                                                                         >  2:530082/1‑194
                                   ttCGCCGGCGCAAGGGGCGGAACTGGCTCCAGGTGTAACCGGTGACGTCCTCGCCGGCGAACACCACCTGCCCTTGACTGGGCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCAAAAACGA                                                                                                                                                                                                             <  2:1091102/169‑1
                                                                                                        GCCCTTGACTGGGCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCAAAAACGAGCATTACACTGCCCTGCACGACCTGAGCCTTGA                                                                                                                                                                            >  2:660694/1‑135
                                                                                                                                              taagagacagTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCAAAAACGAGCATTACACTGCCCTGCACGACCTGAGCCTTGAACTGCATGCCGGGCAGACCCTGGCGATTGTCGGCGAATCCGGCTCGGGCAAGAGCACCGCCCTGCGCATCGCCCTGGGCCTGGAGAAGCCCAGTCAAGGGCAGGTGGTGTTCGCCGGCGAGGACG                                               <  1:292208/212‑1
                                                                                                                                                        TCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCAGAAACGACCATTACACTGCCCTGCACGACCTGAGCCTTCAACTGCAGGCCCGGCAGAC                                                                                                                                                          >  2:464599/1‑105
                                                                                                                                                          TTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCAAAAACGAGCATTACACTGCCCTGCACGACCTGAGCCTTGAACTGCATGCCGGGCAGACCCTGGCGATTGTC                                                                                                                                             >  1:1075004/1‑116
                                                                                                                                                                      GATTCGCCGACAATCGCCAGGGTCTGCCCGGCAAAAACGAGCATTACACTGCCCTGCACGACCTGAGCCTTGAACTGCATGCCGGGCAGACCCTGGCGA                                                                                                                                                  >  2:292207/1‑99
                                                                                                                                                                                                 CCGGCAAAAACGAGCATTACACTGCCCTGCACGACCTGAGCCTTGAACTGCATGCCGGGCAGACCCTGGCGATTGTCGGCGAATCCGGCTCGGGCAAGAGCACCGCCCTGCGCATCGCCCTGGGCCTGGAGAAGCCCAGTCAAGGGCAGGTGGTGTTCGCCGGCGAGGACGTCACCGGTTACACCTGGAGCCAGTTCCGCCCCTTGCGCCGGCGTA  >  1:1107596/1‑216
                                                                                                                                                                                                  CGGCAAAAACGAGCATTACACTGCCCTGCACGACCTGAGCCTTGAACTGCATGCCGGGCAGACCCTGGCGATTGTCGGCGAATCCGGCTCGGGCAAGAGCACCGCCCTGCGCATCGCCCTGGGCCTGGAGAAGCCCAGTCAAGGGCAGGTGG                                                                 >  1:660431/1‑152
                                                                                                                                                                                                                                                                                                                                                                                                                         
GAGCGCGGCGAACGGGTTTTGCTGCACCAGCTGGATACGCCGGCGCAAGGGGCGGAACTGGCTCCAGGTGTAACCGGTGACGTCCTCGCCGGCGAACACCACCTGCCCTTGACTGGGCTTCTCCAGGCCCAGGGCGATGCGCAGGGCGGTGCTCTTGCCCGAGCCGGATTCGCCGACAATCGCCAGGGTCTGCCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3655271‑3655469
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcccggcaAAAACGAGCATTACACTGCCCTGCACGACCTGAGCCTTGAACTGCATGCCGGGCAGACCCTGGCGATTGTCGGCGAATCCGGCTCGGGCAAGAGCACCGCCCTGCGCATCGCCCTGGGCCTGGAGAAGCCCAGTCAAGGGCAGGTGGTGTTCGCCGGCGAGGACGTCACCGGTTACACCTGGAGCCAGTTCCGCCCCTTGCGCCGGCGTA  <  AE015451/3655515‑3655306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.