New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3674369	76 (1.230)	10 (0.170)	6/326	NT	12.2%	coding (187/573 nt)	PP_3238	putative Transcriptional regulator PyrR
	?	AE015451	= 3674401	72 (1.230)					coding (155/573 nt)	PP_3238	putative Transcriptional regulator PyrR

ACGTGGCGGTCGACGAGCACCGCGCTGATGAGGTGGCGCGCACCCAGTTCGGCGAGGTAGGCGCAGGTGCGTAGCAGAGAGTGCCCTTCGTAGAGCACGTCATCGACCACCAGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3674128‑3674369 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgcagcGCCTGCAACTGCACCTGCAAGCACTGAACGGTGCTGCGCCATTGCCGCTCTACCCGATCAAGGTCAAGCGCTATGCAGACGACCTGAGCCTCTTGCATGCGCATACTCAACTCACCGAAAACCCGGAACTCGCCAAGCTCGACCTTGCCGGAACCACCTTGCTGGTGGTCGATGACGTGCTCTACGAAGGGCACTCTCTGCTACGCACCTGCGCCTACCTCGCC  <  AE015451/3674401‑3674178                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ACGTGGCGGTCGACGAGCACCGCGCTGATGAGGTGGCGCGCACCCAGTTCGGCGAGGTAGGCGCAGGTGCGTAGCAGAGAGTGCCCTTCGTAGAGCACGTCATCGACCACCAGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATG                                                                                                                                                                                                                                         <  1:946894/235‑1             ACGAGCACCGCGCTGATGAGGTGGCGCGCACCCAGTTCGGCGAGGTAGGCGCAGGTGAGTAGCAGAGAGTGCCCTTCGTAGAGCACGTCATCGACCACCAGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCA                                                                                                                                                                                                                                    >  2:882103/1‑228                AGCACCGCGCTGATGAGGTGGCGCGCACCCAGTTCGGCGAGGTAGGCGCAGGTGCGTAGCAGAGAGTGCCCTTCGTAGAGCATGTCATCGACCACCAGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCGCCTG                                                                                                                                                                                                                             <  2:1043575/232‑1                                           CCCAGTTCGGCGAGGTAGGCGCAGGTGCGTAGCAGAGAGTGCCCTTCGTAGAGCACGTCATCGACCACCAGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATG                                                                                                                                                                                                                                         <  2:794979/193‑1                                                                                           TAGAGCACGTCATCGACCACCAGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATG                                                                                                                                                                                                                                         >  2:928969/1‑145                                                                                                                       TGGTTCCGGCAAGGTCTAGCTTGGCGAGTTCCGGGGTTTCGGTGAGTTGAGTAGGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATG                                                                                                                                                                                                                                         <  2:1051084/117‑1                                                                                                                                                                                     AAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCGCCTGCAACTGCACCTGCAAGCACTGAACGGTGCTGCGCCATTGCCGCTCTACCCGATCAAGGTCAAGCGCTATGCAGACGACCT                                                                                                                                             >  1:837768/1‑147                                                                                                                                                                                           CTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCGCCTGCAACTGCACCTGCAAGCACTGAACGGTGCTGCGCCATTGCCGCTCTACCCGATCAAGGTCAAGCGCTATGCAGACGACCTGAGCCTCTTGCATGCGCATACTCAACTCACCGAAAACCCGGAACTCGCCAAGCTCGACCTTGCCGGAACCACCTTGCTGGAGGTCGATGACGTG                                               >  1:197435/1‑235                                                                                                                                                                                                       GCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGCGCCTGCAACTGCACCTGCAAGCACTGAACGGTGCTGCGCCATTGCCGCTCTACCCGATCAAGGTCAAGCGCTATGCAGACGACCTCAGCCCCTTGCATGCcc                                                                                                                            >  1:502816/1‑144                                                                                                                                                                                                       GCATAGCGCTTGACCTTGATCGGGCAGAGCGGCAATGGCGCAGCGCCTGCAACTGCACCTGCAAGCACTGga                                                                                                                                                                                                      >  2:371687/1‑70                                                                                                                                                                                                                  GACCTTGATCGGGTAGAGCGGCAATGGCGCAGCGCCTGCAACTGCACCTGCAAGCACTGAACGGTGCTGCGCCATTGCCGCTCTACCCGATCAAGGTCAAGCGCTATGCAGACGACCTGAGCCTCTTGCATGCGCATACTCAACTCACCGAAAACCCGGCACTCGCCCAGC                                                                                        >  1:762114/1‑171                                                                                                                                                                                                                  GACCTTGATCGGGTAGAGCGGCAATGGCGCAGCGCCTGCAACTGCACCTGCAAGCACTGAACGGTGCTGCGCCATTGCCGCTCTACCCGATCAAGGTCAAGCGCTATGCAGACGACCTGAGCCTCTTGCATGCGCATACTCAACTCACCGAAAACCCGGAACTCGCCAAGCTCGACCTTGCCGGAACCACCTTGCTGGTGGTCGATGACGT                                                >  2:771890/1‑211                                                                                                                                                                                                                  GACCTTGATCGGGTAGAGCGGAAAGGGCGCAGCGCCTGCAACTGCACATGCAAGCAAGGAACGGTGATGCGCCATTGCCGCTCTACCCGATCAAGGTCAAGCGCTATGCAGACGACC                                                                                                                                              >  2:1056221/1‑117                                                                                                                                                                                                                     CTTGATCGGGTAGAGCGGCAATGGCGCAGCGCCTGCAACTGCACCTGCAAGCACTGAACGGTGCTGCGCCATTGCCGCTCTACCCGATCAAGGTCAAGCGCTATGCAGACGACCTGAGCCTCTTGCATGCGCATACTCAACTCACCGAAAACCCGGAACTCGCCAAGCTCGACCTTGCCGGAACCACCTTGCTGGTGGTCGATGACGTGCTCTACGA                                       >  2:727611/1‑217                                                                                                                                                                                                                     CTTGATCGGGTAGAGCGGCAATGGCGCAGCGCCTGCAACTGCACCTGCAAGCACTGAACGGTGCTGCGCCATTGCCGCTCTACCCGATCAAGGTCAAGCGCTATGCAGACGACCTGAGCCTCTTGCATGCGCATACTCAACTCACCGAAAACCCGGAACTCGCCAAGCTCGACCTTGCCGGAACCACCTTGCTGGTGGTCGAT                                                     >  1:982663/1‑203                                                                                                                                                                                                                     CTTGATCGGGTAGAGCGGCAATGGCGCAGCGCCTGCAACTGCACCTGCAAGCACTGAACGGTGCTGCGCCATTGCCGCTCTACCCGATCAAGGTCAAGCGCTATGCAGACGACCTGAGCCTCTTGCATGCGCATACTCAACTCACCGAAAACCCGGAACTCGCCAAGCTCGACCTTGCCGGAACCACCTTGCTGGTGGTCGAT                                                     <  2:982662/203‑1                                                                                                                                                                                                                                           GGCGCAGCGCCTGCAACTGCACCTGCAAGCACTGAACGGTGCTGCGCCATTGCCGCTCTACCCGATCAAGGTCAAGCGCTATGCAGACGACCTGAGCCTCTTGCATGCGCATACTCAACTCACCGAAAACCCGGAACTCGCCAAGCTCGACCTTGCCGGAACCACCTTGCTGGTGGTCGATGACGTGCTCTACGAAGGGCACTCTCTGCTACGCACCTGCGCCTACCTCGCC  >  2:1014926/1‑232                                                                                                                                                                                                                                                  CGCCTGCAACTGCACCTGCAAGCACTGAACGGTGCTGCGCCATTGCCGCTCTACCCGATCAAGGTCAAGCGCTATGCAGACGACCTGAGCCTCTTGCATGCGCATACTCAACTCACCGAAAACCCGGAACTCGCCAAGCTCGACCTTGCCGGAACCACCTTGCTGGTGGTCGATGACGT                                                <  2:661082/179‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ACGTGGCGGTCGACGAGCACCGCGCTGATGAGGTGGCGCGCACCCAGTTCGGCGAGGTAGGCGCAGGTGCGTAGCAGAGAGTGCCCTTCGTAGAGCACGTCATCGACCACCAGCAAGGTGGTTCCGGCAAGGTCGAGCTTGGCGAGTTCCGGGTTTTCGGTGAGTTGAGTATGCGCATGCAAGAGGCTCAGGTCGTCTGCATAGCGCTTGACCTTGATCGGGTAGAGCGGCAATGGCGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3674128‑3674369 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgcagcGCCTGCAACTGCACCTGCAAGCACTGAACGGTGCTGCGCCATTGCCGCTCTACCCGATCAAGGTCAAGCGCTATGCAGACGACCTGAGCCTCTTGCATGCGCATACTCAACTCACCGAAAACCCGGAACTCGCCAAGCTCGACCTTGCCGGAACCACCTTGCTGGTGGTCGATGACGTGCTCTACGAAGGGCACTCTCTGCTACGCACCTGCGCCTACCTCGCC  <  AE015451/3674401‑3674178

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.