New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 3954552	40 (0.650)	4 (0.070)	4/332	NT	8.8%	coding (5833/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase
	?	AE015451	= 3954560	44 (0.740)					coding (5825/5844 nt)	mnxG	manganese‑oxidizing multicopper oxidase

CTCGAACTCCACGTTCACGCCGTCCCGGCTGAGCCGGTGCAAGGCCTGCGAGCCACCCCGTTCCTGCAACAGCTCGCGCGGGTCGCACCATAGCTTTTCGTACGCCACGCCCAGGCCGATCAGCGCTACCCCCAGCACTACCCCCAAGTAAGCAGGGCGAGTCTTTTTGTTCATGCTCGCGTTCCCCTTCCGTCACTGCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3954349‑3954552 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccggCAACGGCCCCGGCGCAGTGACGGAAGGGGAACGCGAGCATGAACAAAAAGACTCGCCCTGCTTACTTGGGGGTAGTGCTGGGGGTAGCGCTGATCGGCCTGGGCGTGGCGTACGAAAAGCTATGGTGCGACCCGCGCGAGCTGTTGCAGGAACGGGGTGGCTCGCAGGCCTTGCACCGGCTCAGCCGGGACGGCGTGAACGTGGAGTTCGAGGCCCGGCCATTGGCCGGCGGCG  <  AE015451/3954560‑3954327                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTCGAACTCCACGTTCACGCCGTCCCGGCTGAGCCGGTGCAAGGCCTGCGAGCCACCCCGTTCCTGCAACAGCTCGCGCGGGTCGCACCATAGCTTTTCGTACGCCACGCCCAGGCCGATCAGCGCTACCCCCAGCACTACCCCCAAGTAAGCAGGGCGAGTCTTTTTGTTCATGCTCGCGTTCCCCTTCCGTCACTGCc                                                                                                                                                                                                                                                >  2:907456/1‑199                                  CCGGTGCAAGGCCTGCGAGCCACCCCGTTCCTGCAACAGCTCGCGCGGGTCGCACCATAGCTTTTCGTACGCCACGCCCAGGCCGATCAGCGCTACCCCCAGCACTACCCCCAAGTAAGCAGGGCGAGTCTTTTTGTTCATGCTCGCGTTCCCCTTCCGTCACTGC                                                                                                                                                                                                                                                 <  2:11215/166‑1                                                                       AGCTCGCGCGGGTCGCACCATAGCTTTTCGTACGCCACGCCCAGGCCGATCAGCGCTACCCCCAGCACTACCCCCAAGTAAGCAGGGCGAGTCTTTTTGTTCATGCTCGCGTTCCCCTTCCGTCACTGCGCCG                                                                                                                                                                                                                                             <  1:854333/133‑1                                                                                                                          AGCGCTACCCCCAGCACTACCCCCAAGTAAGCAGGGCGAGTCTTTTTGTTCATGCTCGCGTTCCCCTTCCGTCACTGCGCCGGCAACGGCCCCGGCGCAGTGACGGAAGGGGAACGCGAGCATGAACAAAAAGACTCGCCCTGCTTACTTGGGGGTAGGGCTGGGGGTAGCGCTGATCGGCCTGGGCGTGGCGTACGga                                                                                                                        >  1:686199/1‑197                                                                                                                               TACCCCCAGCACTACCCCCAAGTAAGCAGGGCGAGTCTTTTTGTTCATGCTCGCGTTCCCCTTCCGTCACTGCGCCGGCAACGGCCCCGGCGCAGTGACGGAAGGGGAACGCGAG                                                                                                                                                                                                       >  2:293769/1‑115                                                                                                                                ACCCCCAGCACTACCCCCAAGTAAGCAGGGCGAGTCTTTTTGTTCATGCTCGCGTTCCCCTTCCGTCACTGCGCCGGCAACGGCCCCGGCGCAGTGACGGAAGGGGAA                                                                                                                                                                                                             >  1:891086/1‑108                                                                                                                                           TACCCCCAAGTAAGCAGGGCGAGTCTTTTTGTTCATGCTCGCGTTCCCCTTCCGTCACTGCGCCGGCAACGGCCCCGGCGCAGTGACGGAAGGGGAACGCGAGCATGAACAAAAAGACTCGCCCTGCTTACTTGGGGGTAGTGCTGGGGGTAGCGCTGATCGGCCTGGGCGTGGCGTACGAAAAGCTATGGTGCGACCCGCGCGAGGTGTTGCAGGAACG                                                                                  >  1:389615/1‑220                                                                                                                                               CCCAAGTAAGCAGGGCGAGTCTTTTTGTTCATGCTCGCGTTCCCCTTCCGTCACTGCGCCGGCAA                                                                                                                                                                                                                                         >  1:1023256/1‑65                                                                                                                                                                                                           GGCAACGGCCCGGGCGCAGTGACGGAAGGGGAACGCGGGCATGAACAAAAAGACTCGCCCTGCTTACTTGGGGGTAGTGCTGGGGGTAGCGCTGATCGGCCTGGGCGTGGCGTACGAAAAGCTATGGTGCGACCCGCGCGAGCTGTTGCAGGAACGGGGTGGCTCGCAGGCCTTGCACCGGCTCAGCCGGGACGGCGTGAACGTGGAGTTCGAGGCCCGGCCATTGGCCGGCGGCG  <  1:762144/236‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTCGAACTCCACGTTCACGCCGTCCCGGCTGAGCCGGTGCAAGGCCTGCGAGCCACCCCGTTCCTGCAACAGCTCGCGCGGGTCGCACCATAGCTTTTCGTACGCCACGCCCAGGCCGATCAGCGCTACCCCCAGCACTACCCCCAAGTAAGCAGGGCGAGTCTTTTTGTTCATGCTCGCGTTCCCCTTCCGTCACTGCGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/3954349‑3954552 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccggCAACGGCCCCGGCGCAGTGACGGAAGGGGAACGCGAGCATGAACAAAAAGACTCGCCCTGCTTACTTGGGGGTAGTGCTGGGGGTAGCGCTGATCGGCCTGGGCGTGGCGTACGAAAAGCTATGGTGCGACCCGCGCGAGCTGTTGCAGGAACGGGGTGGCTCGCAGGCCTTGCACCGGCTCAGCCGGGACGGCGTGAACGTGGAGTTCGAGGCCCGGCCATTGGCCGGCGGCG  <  AE015451/3954560‑3954327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.