New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4256735 =	37 (0.600)	5 (0.080)	5/328	NT	12.5%	coding (172/783 nt)	PP_3729	Periplasmic amino acid‑binding protein‑related protein
	?	AE015451	4256752 =	35 (0.590)					coding (155/783 nt)	PP_3729	Periplasmic amino acid‑binding protein‑related protein

TGATCATCACCATTCACGGCACCGGCTACCTGTTCACCGCCAGCGTGGCAGCATGATTCCTCGCGCCTGGCAGTTGGCGCTGGCCTTGACGTTGCCCACCCTGCACGCCAGTGCCAGTGAGCCGGTGCGCTACTGCGACTACCCGGTGTACCCGCCCATTTCCTGGAGCGACGGCCATCAGGTGCGCGGCCTGGCCCCCACCGTGGTGCGCGAACTGTTCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4256958‑4256735 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcgcgcACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAG  >  AE015451/4256752‑4256820                                                                                                                                                                                                                                                                                                       TGATCATCACCATTCACGGCACCGGCTACCTGTTCACCGCCAGCGTGGCAGCATGATTCCTCGCGCCTGGCAGTTGGCGCTGGCCTTGACGTTGCCCACCCTGCACGCCAGTGCCAGTGAGCCGGTGCGCTACTGCGACTACCCGGTGTACCCGCCCATTTCCTGGAGCGACGGCCATCAGGTGCGCGGCCTGGCCCCCACCGTGGTGCGCGAACTGTTCGCGC                                                                       <  1:982311/224‑1                     ACCGGCTACCTGTTCACCGCCAGCGTGGCAGCATGATTCCTCGCGCCTGGCAGTTGGCGCTGGCCTTGACGTTGCCCACCCTGCACGCCAGTGCCAGTGAGCCGGTGCGCTACTGCGACTACCCGGTGTACCCGCCCATTTCCTGGAGCGACGGCCATCAGGTGCGCGGCCTGGCCCCCACCGTGGTGCGCGAACTGTTCGC                                                                         <  1:1101489/202‑1                     ACCGGCTACCTGTTCACCGCCAGCGTGGCAGCATGATTCCTCGCGCCTGGCAGTTGGCGCTGGCCTTGACGTTGCCCACCCTGCACGCCAGTGCCAGTGAGCCGGTGCGCTACTGCGACTACCCGGTGTACCCGCCCATTTCCTGGAGCGACGGCCATCAGGTGCGCGGCCTGGCCCCCACCGTGGTGCGCGAACTGTTCGC                                                                         >  2:1101488/1‑202                            ACCTGTTCACCGCCAGCGTGGCAGCATGATTCCTCGCGCCTGGCAGTTGGCGCTGGCCTTGACGTTGCCCACCCTGCACGCCAGTGCCAGTGAGCCGGTGCGCTACTGCGACTACCCGGTGTACCCGCCCATTTCCTGGAGCGACGGCCATCAGGTGCGCGGCCTGGCCCCCACCGTGGTGCGCGAACTGTTCGC                                                                         <  1:74742/195‑1                                                                                                      TGCACGCCAGTGCCAGTGAGCCGGTGCGCTACTGCGACTACCCGGTGTACCCGCCCATTTCCTGGAGCGACGGCCATCAGGTGCGCGGCCTGGCCCCCACCGTGGTGCGCGAACTGTTCGCGC                                                                       >  1:799482/1‑123                                                                                                      TGCACGCCAGTGCCAGTGAGCCGGTGCGCTACTGCGACTACCCGGTGTACCCGCCCATTTCCTGGAGCGACGGCCATCAGGTGCGCGGCCTGGCCCCCACCGTGGTGCGCGAACTGTTCGCGC                                                                       <  2:799481/123‑1                                                                                                                   CAGTGAGCCGGTGCGCTACTGCGACTACCCGGTGTACCCGCCCATTTCCTGGAGCGACGGCCATCAGGTGCGCGGCCTGGCCCCCACCGTGGTGCGCGAACTGT                                                                             <  1:782591/104‑1                                                                                                                   CAGTGAGCCGGTGCGCTACTGCGACTACCCGGTGTACCCGCCCATTTCCTGGAGCGACGGCCATCAGGTGCGCGGCCTGGCCCCCACCGTGGTGCGCGAACTGT                                                                             >  2:782590/1‑104                                                                                                                              TGCGCTCCTGCGACTACCCGGTGGACCCGCCCATTTCCTGGACCGACGGCCATCAGGTGCGCGGCCTGGCCCCCACCGTGGTGCGCGAACTGTTCGCGCACCCCGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAG  <  1:545279/168‑1                                                                                                                                      TGCGACTACCCGGTGTACCCGCCCATTTCCTGGAGCGACGGCCATCAGGTGCGCGGCCTGGCCCCCACCGTGGTGCGCGAACTGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGG                         <  2:345565/137‑1                                                                                                                                        CGACTGCCCGGTGTACCCGCCCATTTCCTGGAGCGACGGCCATCAGGTGCGCGGCCTGGCCCCCACCGTGGTGCGCGAACTGTTCGCGCAACACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACAC         <  1:307898/151‑1                                                                                                                                                      ACCCGCCCATTTCCTGGAGCGCCGGCCATCAGGCGCGCGGCCTGGCCCCCCCCGTGGTGCGCGAACTGGTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAAT                     <  1:645339/125‑1                                                                                                                                                                          gcCGGCCGTCAGGTGCGGGGCCTGGCCCCCACCGTGGTGCGCGAACTGTTCGGGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAA                      <  1:361989/102‑1                                                                                                                                                                                                                                                                                                       TGATCATCACCATTCACGGCACCGGCTACCTGTTCACCGCCAGCGTGGCAGCATGATTCCTCGCGCCTGGCAGTTGGCGCTGGCCTTGACGTTGCCCACCCTGCACGCCAGTGCCAGTGAGCCGGTGCGCTACTGCGACTACCCGGTGTACCCGCCCATTTCCTGGAGCGACGGCCATCAGGTGCGCGGCCTGGCCCCCACCGTGGTGCGCGAACTGTTCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4256958‑4256735 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcgcgcACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAG  >  AE015451/4256752‑4256820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.