New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 4265494 = | 88 (1.420) | 3 (0.050) | 3/328 | NT | 3.8% | coding (707/951 nt) | vanB | vanillate O‑demethylase oxidoreductase |
? | AE015451 | 4265623 = | 70 (1.190) | coding (836/951 nt) | vanB | vanillate O‑demethylase oxidoreductase | |||||
Rejected: Frequency below/above cutoff threshold. |
GTTCAGGGCCTGTTCCTCTTCGGTGAGAAACAGATCGCGATGGTCCGGTGTGCCCTGCAGCACGCGTGTCAGGCAGGTGCCGCAAATACCCTGCTCGCACGACATGGCGATCTCGATACCATTCTCTTCCAGCACCTGCACCACGGTCCGGTCGGCTGGCACCTCGAACACCTGTCCCGTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4265678‑4265494 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgctgcAGGGCACACCGGACCATCGCGATCTGTTTCTCACCGAAGAGGAACAGGCCCTGAACGATCAGTTCACGCCCTGCTGCTCGCGCTCGAAGACGCCGCTGCTGGTGCTGGACATCTGACCCGTCTTACGACGAGGGCAGGATGACTTTCATGCCCGCGTCTGCCGCAGCCCCGCCAAAGGTTTCGGCATAGCGCAAGGTGGCATTGGCGTGCTCGCGCATGATCGC > AE015451/4265623‑4265846 GTTCAGGGCCTGTTCCTCTTCGGTGAGAACCAGATCGCGATGGTCCGGTGTGCCCTGCAGCACGCGTGTCAGGCAGGTGCCGCAAATACCCTGCTCGCACGACATGGCGATCTCGATACCATTCTCTTCCAGCACCTGCACCACGGTCCGGTCGGCTGGCACCTCGAACACCTGTCCCGTG < 1:27421/181‑1 CCGCAAATACCCTGCTCGCACGACATGGCGATCTCGATACCATTCTCTTCCAGCACCTGCACCACGGTCCGGTCGGCTGGCACCTCGAACACCTGTCCCGTGCTGCAGGGCACACCGGACCATCGCGATCTGTTTCTCACCGAAGAGGAACAGGCCCTGAACGATCAGTTCACGCCCTGCTGCTCGCGCTCGAAGACG > 1:168796/1‑198 ATACCATTCTCTTCCAGCACCTGCACCACGGTCCGGTCGGCTGGCACCTCGAACACCTGTCCCGTGCTGCAGGGCACACCGGACCATCGCGATCTGTTTCTCACCGAAGAGGAACAGGCCCTGAACGATCAGTTCACGCCCTGCTGCTCGCGCTCGAAGACGCCGCTGCTGGTGCTGGACATCTGACCCGT > 2:920320/1‑191 GGTCGGCTGGCACCTCGAACACCTGTCCCGTGCTGCAGGGCACACCGGACCATCGCGATCTGTTTCTCACCGAAGAGGAACAGGCCCTGAACGATCAGTTCACGCCCTGCTGCTCGCGCTCGA > 2:1030623/1‑123 GCTGCAGGGCACACCGGACCATCGCGATCTGTTTCTCACCGAAGAGGAACAGGCCCTGAACGATCAGTTCACGCCCTGCTGCTCGCGCTCGAAGACGCCGCTGCTGGTGCTGGACATCTGACCCGTCTTACGACGAGGGCAGGATGACTTTCATGCCCGCGTCTGCCGCAGCCCCGCCA > 2:1009790/1‑179 TGCAGGGCACACCGGACCATCGCGATCTGTTTCTCACCGAAGAGGAACAGGCCCTGAACGATCAGTTCACGCCCTGCTGCTCGCGCTCGAAGACGCCGCTGCTGGTGCTGGACATCTGACCCGTCTTACGACGAGGGCA > 2:821664/1‑139 GCAGGGCACACCGGACCATCGCGATCTGTTTCTCACCGAAGAGGAACAGGCCCTGAACGATCAGTTCACGCCCTGCTGCTCGCGCTCGAAGACGCCGCTGCTGGTGCTGGACATCTGACCCGTCTTACGACGAGGGCAGGATGACTTTCATGCCCGCGTCTGCCGCAGCCCCGCCAAAGGTTTCGGCATAGCGCAAGGTGGCATTGGCGTGCTCGCGCATGATCGC < 1:800603/226‑1 GTTCAGGGCCTGTTCCTCTTCGGTGAGAAACAGATCGCGATGGTCCGGTGTGCCCTGCAGCACGCGTGTCAGGCAGGTGCCGCAAATACCCTGCTCGCACGACATGGCGATCTCGATACCATTCTCTTCCAGCACCTGCACCACGGTCCGGTCGGCTGGCACCTCGAACACCTGTCCCGTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4265678‑4265494 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgctgcAGGGCACACCGGACCATCGCGATCTGTTTCTCACCGAAGAGGAACAGGCCCTGAACGATCAGTTCACGCCCTGCTGCTCGCGCTCGAAGACGCCGCTGCTGGTGCTGGACATCTGACCCGTCTTACGACGAGGGCAGGATGACTTTCATGCCCGCGTCTGCCGCAGCCCCGCCAAAGGTTTCGGCATAGCGCAAGGTGGCATTGGCGTGCTCGCGCATGATCGC > AE015451/4265623‑4265846 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |