| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 4275476 = | 59 (0.950) | 7 (0.120) | 7/312 | NT | 12.2% | coding (1433/1500 nt) | glcD | glycolate oxidase, putative FAD‑linked subunit |
| ? | AE015451 | 4275492 = | 47 (0.840) | coding (1449/1500 nt) | glcD | glycolate oxidase, putative FAD‑linked subunit | |||||
CGTAGCTGACGATGCCGCGGTGCTTGCGGGTGTCGAGTACTTCGCCAGCCACCGGGTTGCCGAGCATCGCTTTGCTGTTGCTGCCCTGGATACGCAGCGGCGTACCTTCGTTCAGCGCCTGGTTGACCTGCTCCAACAGCGTTTGGCTCATGTCGCGGTCCATGCTCATCAGAAGCGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCCGAATTCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4275711‑4275476‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgaattcggcgcCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAGCCAAACGCTGTTGGAGCAGGTCAACCAGGCGCTGAACGAAGGTACGCCGCTGCGTATCCAGGGCAGCAACAGCAAAGCGATGCTCGGCAACCCGGTGGCTGGCGAAGTACTCGACACCCGCAAGCACCGCGGCATCGTCAGCTACGACCCCA > AE015451/4275492‑4275717 CGTAGCTGACGATGCCGCGGTGCTTGCGGGTGTCGAGTACTTCGCCAGCCACCGGGTTGCCGAGCATCGCTTTGCTGTTGCTGCCCTGGATACGCAGCGGCGTACCTTCGTTCAGCGCCTGGTTGACCTGCTCCAACAGCGTTTGGCTCATGTCGCGGTCCATGCTCATCAGAAGCGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCCGAATTCGGCG < 1:627448/235‑1 GATGCCGCGGTGCTTGCGGGTGTCGAGTACTTCGCCAGCCACCGGGTTGCCGAGCATCGCTTTGCTGTTGCTGCCCTGGATACGCAGCGGCGTACCTTCGTTCAGCGCCTGGTTGACCTGCTCCAACAGCGTTTGGCTCATGTCGCGGTCCATGCTCATCAGAAGCGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCCGAATTCGGCGCCCTGCACGT < 1:397453/235‑1 TTGCGGGTGTCGAGTACTTCGCCAGCCACCGGGTTGCCGAGCATCGCTTTGCTGTTGCTGCCCTGGATACGCAGCGGCGTACCTTCGTTCGGCGCCTGGTTGACCTGCTCCAACAGCGTTTGGCTCATGTCGCGGTCCATGCTCATCAGAAGCGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCCGAATTCGGCGCCC < 1:1114017/215‑1 gCGAGTACTTCGCCAGCCACCGGGTTGCCGAGCATCGCTTTGCTGTTGCTGCCCTGGATACGCAGCGGCGTACCTTCGTTCAGCGCCTGGTTGACCTGCTCCAACAGCGTTTGGCTCATGTCGCGGTCCATGCTCATCAGAAGCGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCCGAATTCGGCG < 1:249386/202‑1 TTGCTGCCCTGGATACGCAGCGGCGTACCTTCGTTCAGCGCCTGGTTGACCTGCTCCAACAGCGTTTGGCTCATGTCGCGGTCCATGCTCATCAGAAGCGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCCGAATTCGGCGCCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTC < 2:687960/208‑1 cGCGCCTGGTTGACCTGCTCCAACAGCGTGGGGCTCATGTCGCGGTCCATGCTCATCAGAAGCGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCCGAAT < 2:74448/115‑1 GCGTTTGGCTCAGGTCGCGGTCCATGCTCATCAGAAGCGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCCGAATTCGGCGCCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGA < 2:381856/153‑1 TGTCGCGGTCCATGCTCATCAGCAGCGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCCGAATTCGGCGCCCTGCACGTGCACCAGGGG < 2:715120/105‑1 CGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCCGAATGCGGCGCCCTGCACGTGCGCCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAGCC < 2:943201/127‑1 GGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCCGAATTCGGCGCCCTGCACGTGCACCAGG < 2:492019/67‑1 TGCACGTGCAGGGCGCCGAATTCGGCGCCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAGCCAAACGCTGTTGGAGCAGGTCAACCAGGCGCTGAACGAAGGTACGCCGCTGCGTA > 2:372412/1‑158 GCCGAATTCGGCGCCCTGCACGTGCGCCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAGCCAAACGCTGTTGGAGCAGGTCACCCAGGCGCTGAACGAAGGTACGC < 2:312665/135‑1 CGAATTCGGCGCGCTGCACGTGCGCCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTC < 2:257117/61‑1 AATTCGGCGCCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAGCCAAACGCTGTTGGAGCAGGTCAACCAGGCGCTGAACGAAGGTACGCCGCTGCGTATCCAGGGCAGCAACAGCAAAGCGATGCTCGGCAACCCGGTGGCTGGCGAAGTACTCGACACCCGCAAGCACCGCGGCATCGTCAGCTACGACCCCA > 1:1074463/1‑236 TTCGGCGCCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAGCCAAACGCTGTTGGAGCAGGTCAACCAGGCGCTGAACGAAGGTACGCCGCTGCGTATCCAGGGCAGCAACAGCAAAGCGATGCTCGGCAACCCGGTGGCTGGCGAAGTACTCGACACCCGCAAGCACCGCGGCATCGTCAGCTACGACCCCA < 2:672904/234‑1 CGTAGCTGACGATGCCGCGGTGCTTGCGGGTGTCGAGTACTTCGCCAGCCACCGGGTTGCCGAGCATCGCTTTGCTGTTGCTGCCCTGGATACGCAGCGGCGTACCTTCGTTCAGCGCCTGGTTGACCTGCTCCAACAGCGTTTGGCTCATGTCGCGGTCCATGCTCATCAGAAGCGCTCCAGCTCGGGGAAGGGCAGTTGCCCCTGGTGCACGTGCAGGGCGCCGAATTCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/4275711‑4275476‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccgaattcggcgcCCTGCACGTGCACCAGGGGCAACTGCCCTTCCCCGAGCTGGAGCGCTTCTGATGAGCATGGACCGCGACATGAGCCAAACGCTGTTGGAGCAGGTCAACCAGGCGCTGAACGAAGGTACGCCGCTGCGTATCCAGGGCAGCAACAGCAAAGCGATGCTCGGCAACCCGGTGGCTGGCGAAGTACTCGACACCCGCAAGCACCGCGGCATCGTCAGCTACGACCCCA > AE015451/4275492‑4275717 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |