New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	4358973 =	41 (0.660)	5 (0.090)	5/326	NT	11.0%	coding (983/1446 nt)	PP_3834	conserved protein of unknown function
	?	AE015451	4359108 =	42 (0.720)					coding (848/1446 nt)	PP_3834	conserved protein of unknown function

GGCCTTCGGGGATTGGCAAGACATCATTGGGCCTGGCCTTTCTGGGTGCCAGCACCCCGCAGGCACCGGGGTTGCATTTCGGTTTTTACGAAACACCCGAACGCCTGCGCAGCAAGGCCGCTTCGCTCGGTTACGATTTTGCCGCGATGGAGAAGGGCGGTAGCTTGCAGCTGTGCTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4359153‑4358973 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctggcaCCCAGAAAGGCCAGGCCCAATGATGTCTTGCCAATCCCCGAAGGCCCCATCAACAGGCTGACTGACCCGGTGGCCAAGCCACCGCCAAGCATTTCATCGAAGGTTGGTACGCCGCTGCTGATACGCGCCAAGGTGCCACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGA  >  AE015451/4359108‑4359337                                                                                                                                                                                                                                                                                                                                                                                                                             GGCCTTCGGGGAGTGGCAAGACATCATGGGGCCTGGCCTTTCTGGGTGCCAGCACCCCGCAGGCACCGGGGTTGCATTTCGGTTTTTACGAAACACCCGAACGCCTGCGCAGCAAGGCCGCTTCGCTCGGTTACGATTTTGCCGCGATGGAGAAGGGCGGTAGCTTGCAGCTG                                                                                                                                                                                                                                                <  2:37880/173‑1                                                                                                            CGCAGCAAGGCCGCTTCGCTCGGTTACGATTTTGCCGCGATGGAGAAGGGCGGTAGCTTGCAGCTGTGCTGGCACCCAGAAAGGCCAGGCCCAATGATGTCTTGCCAATCCCCGAAGGCCCCATCAACAGGCTGACTGACCCGGTGGCCAAGCCACCGCCAAGCATTTCATCGAAGGTTGGTACGCCGCTGCTGATACGCGCCAAGGTG                                                                                                 <  1:687057/209‑1                                                                                                            CGCAGCAAGGCCGCTTCGCTCGGTTACGATTTTGCCGCGATGGAGAAGGGCGGTAGCTTGCAGCTGTGCTGGCACCCAGAAAGGCCAGGCCCAATGATGTCTTGCCAATCCCCGAAGGCCCCATCAACAGGCTGACTGACCCGGTGGCCAAGCCACCGCCAAGCATTTCATCGAAGGTTGGTACGCCGCTGCTGATACGCGCCAAGGTG                                                                                                 >  2:687056/1‑209                                                                                                                    GGCCGCTTCGCTCGGTTACGATTTTGCCGCGATGGAGAAGGGCGGTAGCTTGCAGCTGTGCTGGCACCCAGAAAGGCCAGGCCCAATGATGTCTTGCCAATCCCCGAAGGCCCCATCAACAGGCTGACTGACCCGGTGGCCAAGCCACCGCCAAGCATTTCATCGAAGGTTGGTACGCCGCTGCTGATACGCGCCAAGGTGCCACTACCCAA                                                                                      >  2:457974/1‑212                                                                                                                                     ACGATTTTGCCGCGATGGAGAAGGGCGGTAGCTTGCAGCTGTGCTGGCACCCAGAAAGGCCAGGCCCAATGATGTCTTGCCAATCCCCGAAGGCCCCATCAACAGGCTGACTGACCCGGTGGCCAAGCCACCGCCAAGCATTTCATCGAAGGTTGGTACGCCGCTGCTGATACGCGCCAAGGTGCCACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGA                                             <  1:622531/236‑1                                                                                                                                               CGCGATGGAGAAGGGCGGTAGCTTGCAGCTGTGCTGGCACCCAGAAAGGCCAGGCCCAATGATGTCTTGCCAATCCCCGAAGGCCCCATCAACAGGCTGACTGACCCGGTGGCCAAGCCACCGCCAAGCATTTCATCGAAGGTTGGTACGCCGCTGCTGATACGCGCCAAGGTGCCACTACCCAA                                                                                      >  2:622530/1‑185                                                                                                                                                                                aTGGCACCCAGAAAGGCCAGGCCCAATGATGTCTTGCCAATCCCCGAAGGCCCCATCAACAGGCTGACTGACCCGGTGGCCAAGCCACCGCC                                                                                                                                                  <  2:90509/91‑1                                                                                                                                                                                CTGGCACCCAGAAAGGCCAGGCCCAATGATGTCTTGCCAATCCCCGAAGGCCCCATCAACAGGCTGACTGACCCGGTGGCCAAGCCACCGCCAAGCATTTCATCGAAGGTTGGTACGCCGCTGCTGATACGCGCCAAGGTGCCACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGCTAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCC    >  1:654040/1‑234                                                                                                                                                                                 TGGCACCCAGAAAGGCCAGGCCCAATGATGTCTTGCCAATCCCCGAAGGCCCCATCAACAGGCTGACTGACCCGGTGGCCAAGCCACCGCCAAGCATTTCATCGAAGGTTGGTACGCCGCTGCTGATACGCGCCAAGGTGCCACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGA  <  1:1064561/235‑1                                                                                                                                                                                                                                                                                                                                                                                                                             GGCCTTCGGGGATTGGCAAGACATCATTGGGCCTGGCCTTTCTGGGTGCCAGCACCCCGCAGGCACCGGGGTTGCATTTCGGTTTTTACGAAACACCCGAACGCCTGCGCAGCAAGGCCGCTTCGCTCGGTTACGATTTTGCCGCGATGGAGAAGGGCGGTAGCTTGCAGCTGTGCTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/4359153‑4358973 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctggcaCCCAGAAAGGCCAGGCCCAATGATGTCTTGCCAATCCCCGAAGGCCCCATCAACAGGCTGACTGACCCGGTGGCCAAGCCACCGCCAAGCATTTCATCGAAGGTTGGTACGCCGCTGCTGATACGCGCCAAGGTGCCACTACCCAATTGGCTGGGGTGGCTGAACAACGCTTCCAGGCGAGGATAGACCTGCATGCCGGACTCATCGATAAGGCATTCGTGACGCCCCGA  >  AE015451/4359108‑4359337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.