New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4568152	55 (0.890)	3 (0.050)	3/316	NT	6.2%	coding (82/2070 nt)	malQ	4‑alpha‑glucanotransferase
	?	AE015451	= 4568524	40 (0.700)					coding (454/2070 nt)	malQ	4‑alpha‑glucanotransferase

CTCTGCGCATCGACCTGAACCTGGCCGACACCCCGCAGGCGGTCGAACTGCCCGCGCCATCCACACGGCTGTTCGACAGCAGCGACACCCGCCACCCGGATACCCACCTGGCTGCCTACAGCTGTGTGGTCAGCCTGCTTCCCCCTGCCCAGGAGCACCCATGAGCGAAACCGCCCTGCACCGTCTGGCATCCAGCGTCGGGCTGAGCCGCGACTGGATCGACGCCAATGCCAGGCCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4567911‑4568152 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccaggccccagcAGCGTGGTGGCGGCTGTTGCACCTTTTCTTCCAGGCTGTGACAGCGTGTTGGCGCCACTGCCACGGTGAAGCGGCGGCTGTCGATTTCCACCTGGTGATAGCCGATGGGCAGCTCGCCGGGCAGGCGCGCCTGGTCATCGAGGCTGAGGGTGACA  <  AE015451/4568524‑4568370                                                                                                                                                                                                                                                                                                                                                                                                               CTCTGCGCATCGACCTGAACCTGGCCGACACCCCGCAGGCGGTCGAACTGCCCGCGCCATCCACACGGCTGTTCGACAGCAGCGACACCCGCCACCCGGATACCCACCTGGCTGCCTACAGCTGTGTGGTCAGCCTGCTTCCCCCTGCCCAGGAGCACCCATGAGCGAAACCGCCCTGCACCGTCTGGCATCCAGCGTCGGGCTGAGCCGCGACTGGATCGACGCCAATGCCAGGC                                                                                                                                                                   >  1:957645/1‑236      CGCATCGACCTGAACCTGGCCGACACCCCGCAGGCGGTCGAACTGCCCGCGCCATCCACACGGCTGTTCGACAGCAGCGACACCCGCCACCCGGATACCCACCTGGCTGCCTACAGCTGTGTGGTCAGCCTGCTTCCCCCTGCCCAGGAGCACCCATGAGCGAAACCGCCCTGCACCGTCTGGCATCCAGCGTCGGGCTGAGCCGCGACTGGATCGACGCCAATGCCAGGCCCCAG                                                                                                                                                              <  1:507036/236‑1       GCATCGACCTGAACCTGGCCGACACCCCGCAGGCGGTCGAACTGCCCGCGCCATCCACACGGCTGTTCGACAGCAGCGACACCCGCCACCCGGATACCCACCTGGCTGCCTACAGCTGTGTGGTCAGCCTGCTTCCCCCTGCCCAGGAGCACCCATGAGCGAAACCGCCCTGCACCGTCTGGCATCCAGCGTCGGGCTGAGCCGCGACTGGATCGACGCCAATGCCAGGCCCCAGC                                                                                                                                                             >  1:575552/1‑236       GCATCGACCTGAACCTGGCCGACACCCCGCAGGCGGTCGAACTGCCCGCGCCATCCACACGGCTGTTCGACAGCAGCGACACCCGCCACCCGGATACCCACCTGGCTGCCTACAGCTGTGTGGTCAGCCTGCTTCCCCCTGCCCAGGAGCACCCATGAGCGAAACCGCCCTGCACCGTCTGGCATCCAGCGTCGGGCTGAGCCGCGACTGGATCGACGCCAATGCCAGGCCCCAGC                                                                                                                                                             >  1:94244/1‑236       GCATCGACCTGAACCTGGCCGACACCCCGCAGGCGGTCGAACTGCCCGCGCCATCCACACGGCTGTTCGACAGCAGCGACACCCGCCACCCGGATACCCACCTGGCTGCCTACAGCTGTGTGGTCAGCCTGCTTCCCCCTGCCCAGGAGCACCCATGAGCGAAACCGCCCTGCACCGTCTGGCATCCAGCGTCGGGCTGAGCCGCGACTGGATCGACGCCAATGCCAGGCCCC                                                                                                                                                                >  2:860399/1‑233                                                                                                CCGGATACCCACCTGGCTGCCTACAGCTGTGTGGTCAGCCTGCTTCCCCCTGCCCAGGAGCACCCATGAGCGAAACCGCCCTGCACCGTCTGGCATCCAGCGTCGGGCTGAGCCGCGACTGGATCGACGCCAATGCCAGGCCCCAGCAGCGTGGTGGCGGCTGTTGCACCTTTTCTTCCAGGCTGTGACAGCGTGTTGGCGCCACTGCCACGGTGAAGCGGCGGCTGTCGATTTCC                                                                    <  1:1095424/236‑1                                                                                                        cccCCTGGCTGCCTACAGCTGTGTGGTCAGCCTGCTTCCCCCCGCCCAGGAGCACCCATGAGCGAAACCGCCCTGCCCCGTCTGGCATCCAGCGTCGGGCTGAGCCGCGACTGGATCGACGCCAATGCCAGGCCC                                                                                                                                                                 <  2:359208/132‑1                                                                                                                                                                 ATGAGCGAAACCGCCCTGCACCGTCTGGCATCCAGCGTCGGGCTGAGCCGCGACTGGATCGACGCCAATGCCAGGCCCCAGCAGCGTGGTGGCGGCTGTTGCACCTTTTCTTCCAGGCTGTGACAGCGTGTTGGCGCCA                                                                                                    <  1:339405/139‑1                                                                                                                                                                 ATGAGCGAAACCGCCCTGCACCGTCTGGCATCCAGCGTCGGGCTGAGCCGCGACTGGATCGACGCCAATGCCAGGCCCCAGCAGCGTGGTGGCGGCTGTTGCACCTTTTCTTCCAGGCTGTGACAGCGTGTTGGCGCCA                                                                                                    >  2:339404/1‑139                                                                                                                                                                                                                                       CCAGGCCCCAGCAGCGTGGTGGCGGCTGTTGCACCTTTTCTTCCAGGCTGTGACAGCGTGTTGGCGCCACTGCCACGGTGAAGCGGCGGCTGTCGATTTCCACCTGGTGATAGCCGATGGGCAGCTCGCCGGGCAGGCGCGCCTGGTCATCGGGGCTGAGGGTGACA  >  1:1006880/1‑167                                                                                                                                                                                                                                                                                                                                                                                                               CTCTGCGCATCGACCTGAACCTGGCCGACACCCCGCAGGCGGTCGAACTGCCCGCGCCATCCACACGGCTGTTCGACAGCAGCGACACCCGCCACCCGGATACCCACCTGGCTGCCTACAGCTGTGTGGTCAGCCTGCTTCCCCCTGCCCAGGAGCACCCATGAGCGAAACCGCCCTGCACCGTCTGGCATCCAGCGTCGGGCTGAGCCGCGACTGGATCGACGCCAATGCCAGGCCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4567911‑4568152 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccaggccccagcAGCGTGGTGGCGGCTGTTGCACCTTTTCTTCCAGGCTGTGACAGCGTGTTGGCGCCACTGCCACGGTGAAGCGGCGGCTGTCGATTTCCACCTGGTGATAGCCGATGGGCAGCTCGCCGGGCAGGCGCGCCTGGTCATCGAGGCTGAGGGTGACA  <  AE015451/4568524‑4568370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.