New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4863737	46 (0.740)	4 (0.070)	4/316	NT	7.8%	coding (2136/3489 nt)	smc	Chromosome partition protein Smc
	?	AE015451	= 4864288	52 (0.920)					coding (1585/3489 nt)	smc	Chromosome partition protein Smc

TGCTGGCGGGCTTCCTGACGCACCCGGTCAAGGCTTTCGCGCAAGGTATCGCGGCGGGCCATCAACTGTTCGCGCTGCTCGGTGTCCTGGGCCATGAGCTCCAAAGCCTCTTGCAGCAGCAGGCGCGCTTCGCCCAGTTGCTCGTGTTCCAGGGCGCGCTGTTCTTCCAGCTCGCTCAGCTCTTCCTGCAGGCGGCGGCGGCGCAGCTCGACCTGCTCGGCGCGCGCGCGGCTGGCCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4863498‑4863737 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggctggccgaaGGCTTGCGGGTGGAGCCGGGTTGGGAGCTGGCGGTAGAGACGGTGCTTGGCGCCGATCTGCAGGCTGTGCTGGTGGACGATTTCAACGACCTTGATTTTGCCGGCCTGGAACAGGGTGAGCTGCGCTTGCTGCTGGCCGTCGGCGCGGGGGCGACGTTGCCCGGCAGCTTGCTGGAGAAGGTCGAGGGCCGTATCGACCTGGCGCCCTGGCTG  <  AE015451/4864288‑4864076                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGCTGGCGGGCTTCCTGACGCACCCGGTCAAGGCTTTCGCGCAAGGTATCGCGGCGGGCCATCAACTGTTCGCGCTGCTCGGTGTCCTGGGCCATGAGCTCCAAAGCCTCTTGCAGCAGCAGGCGCGCTTCGCCCAGTTGCTCGTGTTCCAGGGCGCGCTGTTCTTCCAGCTCGCTCAGCTCTTCCTGCAGGCGGCGGCGGCGCAGCTCGACCTGCTCGGCGCGCGCGCGGCTGGC                                                                                                                                                                                                                           >  1:981532/1‑236          GCTTCCTGACGCACCCGGTCAAGGCTTTCGCGCAAGGTATCGCGGCGGGCCATCAACTGTTCGCGCTGCTCGGTGTCCTGGGCCATGAGCTCCAAAGCCTCTTGCAGCAGCAGGCGCGCTTCGCCCAGTTGCTCGTGTTCCAGGGCGCGCTGTTCTTCCAGCTCGCTCAGCTCTTCCTGCAGGCGGCGGCGGCGCAGCTCGACCTGCTCGGCGCGCGCGCGGCTGG                                                                                                                                                                                                                            <  1:652905/226‑1                     CACCCGGTCACGGCTTTCGCGCAAGGTATCGCGGCGGGCCATCAACTGTTCGCGCTGCTCGGTGTCCTGGGCCATGAGCTCCAAAGCCTCTTGCAGCAGCAGGCGCGCTTCGCCCAGTTGCTCGTGTTCCAGGGCGCGCTGTTCTTCCAGCTCGCTCAGCTCTTCCTGCAGGCGGCGGCGGCGCAGCTCGACCTGCTCGGCGCGCGCGCGGCTGGCCGAAGGCTTGCGGGTGG                                                                                                                                                                                                          <  2:862680/233‑1                                                                                         GGGCCATGAGCTCCAAAGCCTCTTGCAGCAGCAGGCGCGCTTCGCCCAGTTGCCCGTGTTCCAGGGCGCGCTGTTCTTCCAGCTCGCTCCGCTCTTCCTGCAGGCGGCGGCGGCGCAGCTCGACCTGCTCGGCGCGCGCGCGG                                                                                                                                                                                                                                >  2:31211/1‑143                                                                                          GGCCATGAGCTCCAAAGCCTCTTGCAGCAGCAGGCGCGCTTCGCCCAGTTGCTCGTGTTCCAGGGCGCGCTGTTCTTCCAGCTCGCTCAGCTCTTCCTGCAGGCGGCGGCGGCGCAGCTCGACCTGCTCGGCGCGCGCGCGGCTGGCCGAAGGCTTGCGGGTGGAGCCGGGTTGGGAGCTGGCGGTAGAGACGGTGCTTGGCGCCGATCTGCAGGCTGTGCTGGTGGACGATTT                                                                                                                                    <  2:581134/234‑1                                                                                             CATGAGCTCCAAAGCCTCTTGCAGCAGCAGGCGCGCTTCGCCCAGTTGCTCGTGTTCCAGGGCGCGCTGTTCTTCCAGCTCGCTCAGCTCTTCCTGCAGGCGGCCGCGGCGCAGCTCGACCTGCCCGGCGCGCGCG                                                                                                                                                                                                                                   >  2:103591/1‑136                                                                                                  GCTCCAAAGCCTCTTGCAGCAGCAGGCGCGCTTCGCCCAGTTGCTCGTGTTCCAGGGCGCGCTGTTCTTCCAGCTCGCTCAGCTCTTCCTGCAGGCGGCGGCGGCGCAGCTCGACCTGCTCGGCGCGCGCGGGGCT                                                                                                                                                                                                                              >  2:656238/1‑136                                                                                                                           GCGCGCTTCGCCCAGTTGCTCGTGTTCCAGGGCGCGCTGTTCTTCCAGCTCGCTCAGCTCTTCCTGCAGGCGGCGGCGGCGCAGCTCGACCTGCTCGGCGCGCGCGCGGCTGGCCGAAGGCTTGCGGGTGGAGCCGGGTTGGGAGCTGGCGGTAGAGACGGTGCTTGGCGCCGATCTGCAGGCTGTGCTGGTGGACGATTTCAACGACCTTGATTT                                                                                                                     <  1:54862/216‑1                                                                                                                                        AGTTGCTCGTGTTCCAGGGCGCGCTGTTCTTCCAGCTCGCTCAGCTCTTCCTGCAGGCGGCGGCGGCGCAGCTCGACCTGCTCGGCGCGCGCGCGGCTGGCCGAAGGCTTGCGGGTGGAGCCGGGTTGGGAGCTGGCGGTAGAGACGGTGCTTG                                                                                                                                                                      <  1:862746/154‑1                                                                                                                                                                                                                                               gAGGCTTGCGGGTGGAGCCGGGTTGGGAGCTGGC                                                                                                                                                                                       <  2:20255/33‑1                                                                                                                                                                                                                                               gAGGCTAGCGGGGGGCGCCGGGTTGGGAGCTGGCGGTAGGGACGGTGCTTGGCGCCGATCTGCAGGCTGTGCTGGTGGACGATTTCAACGACCTTGATTTTGCCGGCCTGGAACAGGGTGAGCTGCGCTTGCTGCTGGCCGTCGGCGCGGGGGCGACGTTGCCCGGCAGCTTGCTGGAGAAGGTCGAGGGCCGTATCGACCTGGCGCCCTGGCTG  <  1:357103/214‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGCTGGCGGGCTTCCTGACGCACCCGGTCAAGGCTTTCGCGCAAGGTATCGCGGCGGGCCATCAACTGTTCGCGCTGCTCGGTGTCCTGGGCCATGAGCTCCAAAGCCTCTTGCAGCAGCAGGCGCGCTTCGCCCAGTTGCTCGTGTTCCAGGGCGCGCTGTTCTTCCAGCTCGCTCAGCTCTTCCTGCAGGCGGCGGCGGCGCAGCTCGACCTGCTCGGCGCGCGCGCGGCTGGCCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4863498‑4863737 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggctggccgaaGGCTTGCGGGTGGAGCCGGGTTGGGAGCTGGCGGTAGAGACGGTGCTTGGCGCCGATCTGCAGGCTGTGCTGGTGGACGATTTCAACGACCTTGATTTTGCCGGCCTGGAACAGGGTGAGCTGCGCTTGCTGCTGGCCGTCGGCGCGGGGGCGACGTTGCCCGGCAGCTTGCTGGAGAAGGTCGAGGGCCGTATCGACCTGGCGCCCTGGCTG  <  AE015451/4864288‑4864076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.