New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 4911042	64 (1.030)	4 (0.070)	4/326	NT	5.8%	coding (670/1197 nt)	cycH	cytochrome c‑type biogenesis protein
	?	AE015451	= 4911129	70 (1.190)					coding (583/1197 nt)	cycH	cytochrome c‑type biogenesis protein

ACCTTGTCCTTCAAGGCAGCCGCCAGTTCCACCCGCACTTTCAGGCGAGCCGCCACAGGTGCAGGCTCGGTCGCCTCTGCTGGCACCCCACCCAGGCGCTCGGCGGCGCGGTCGATACCACCCTGCAACGCCGCTCGCGATGCATCACCTTCTGGCAACTGCGCCAGCAAACGCTTCCAGTAGTCGATGGCTTCCTGATAACGCTCGCCTTCAAACGCAGCAATACCGCGCAGGCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4910804‑4911042 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcccagTACTTTGCCGCCAACAAGCAGTGGAGCCCGCAATTGCAGGCGCTGACTGACGAAGCGTTGAAGGCTGACCCCAACGAGGTGACCAGCCTGGGCCTGCGCGGTATTGCTGCGTTTGAAGGCGAGCGTTATCAGGAAGCCATCGACTACTGGAAGCGTTTGCTGGCGCAGTTGCCAGAAGGTGATGCATCGCGAGCGGCGTTGCAGGGTGGTATCGACCGCGCCGCCGAGCGCCT  <  AE015451/4911129‑4910897                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACCTTGTCCTTCAAGGCAGCCGCCAGTTCCACCCGCACTTTCAGGCGAGCCGCCACAGGTGCAGGCTCGGTCGCCTCTGCTGGCACCCCACCCAGGCGCTCGGCGGCGCGGTCGATACCACCCTGCAACGCCGCTCGCGATGCATCACCTTCTGGCAACTGCGCCAGCAAACGCTTCCAGTAGTCGATGGCTTCCTGATAACGCTCGCCTTCAAACGCAGCAATACCGCGCAGGC                                                                                                                                                                                                                                               <  1:984491/235‑1                                                    GCCACAGGTGCAGGCTCGGTCGCCTCTGCTGGCACCCCACCCAGGCGCTCGGCGGCGCGGTCGATACCACCCTGCAACGCCGCTCGCGATGCATCACCTTCTGGCAACTGCGCCAGCAAACGCTTCCAGTAGTCGATGGCTTCCTGATAACGCTCGCCTTCAAACGCAGCAATACCGCGCAGGCCCAcg                                                                                                                                                                                                                                          >  1:345204/1‑187                                                                 GCTCGGTCGCCTCTGCTGGCACCCCACCCAGGCGCTCGGCGGCGCGGTCGATACCACCCTGCAACGCCGCTCGCGATGCATCACCTTCTGGCAACTGCGCCAGCAAACGCTTCCAGTAGTCGATGGCTTCCTGATAACGCTCGCCTTCAAACGCAGCAATACCGCGCAGGCCCAGTACTTTGCCGCCAACAAGCAGTGGAGCCCGCAATTGCAGGCGCTGACTGACGAAGCGTTGA                                                                                                                                                                              <  1:934804/236‑1                                                                                     ACCCCACCCAGGCGCTCGGCGGCGCGGTCGATACCACCCTGCAACGCCGCTCGCGATGCATCACCTTCTGGCAACTGCGCCAGCAAACTCTTCCAGTAGTCGATGGCTTCCTGATAACGCTCGCCTTCAAACGCAGCAATACCGCGCAGGCCCAGTACTTTGCCGCCAACAAGCAGTGGAGCCCGCAATTGCAG                                                                                                                                                                                                    <  1:84678/194‑1                                                                                                 CGCTCGGCGGCGCGGTCGATACCACCCTGCAACGCCGCTCGCGATGCATCACCTTCTGGCAACTGCGCCAGCAAACGCTTCCAGTAGTCGATGGCTTCCTGATAACGCTCGCCTTCAAACGCAGCAATACCGCGCAGGCCCAGTACTTTGCCGCCAACAAGCAGTGGAGCCCGCAATTGCAGGCGCTGACTGACGAAGCGTTGAAGGCTGACCCCAACGAGGTGACCAGCCTGGGC                                                                                                                                              <  1:942833/236‑1                                                                                                  GCTCGGCGGCGCGGTCGATACCACCCTGCAACGCCGCTCGCGATGCATCACCGTCTGGCAACTGCGCCAGCAAACGCTTACAGTAGTCGATGGCTTCCTGATAACGCTCGCCTTCAAACGCAGCAATACCGCGCA                                                                                                                                                                                                                                                  >  1:566948/1‑135                                                                                                                                                                                                     GATAACGCTCGCCTTCAAACGCAGCAATACCGCGCAGGCCCAGTACTTTGCCGCCAACAAGCAGTGGAGCCCGCAATTGCAGGCGCTGACTGACGAAGCGTTGAAGGCTGACCCCAACGAGGTGACCAGCCTGGGCCTGCGCGGTATTGCTGCGTTTGAAGGCGAGCGTTATCAGGAA                                                                                                    >  1:448684/1‑178                                                                                                                                                                                                                                       CAGGCCCAGTACTTTGCCGCCAACAAGCAGTGGAGCCCGCAATTGCAGGCGCTGACTGACGAAGCGTTGAAGGCTGACCCCAACGAGGTGACCAGCCTGGGCCTGCGCGGTATTGCTGCGTTTGAAGGCGAGCGTTATCAGGAAGCCATCGACTACTGGAAGCGTTTGCTGGCGCAGTTGCCAGAAGGTGATGCATCGCGAGCGGCGTTGCAGGGTGGTATCGACCGCGCCGCCGA        <  1:759452/236‑1                                                                                                                                                                                                                                        AGGCCCAGTACTTTGCCGCCAACAAGCAGTGGAGCCCGCAATTGCAGGCGCTGACTGACGAAGCGTTGAAGGCTGACCCCAACGAGGTGACCAGCCTGGGCCTGCGCGGTATTGCTGCGTTTGAAGGCGAGCGTTATCAGGAAGCCATCGACTACTGGAAGCGTTTGCTGGCGCAGTTGCCAGAAGGTGATGCATCGCGAGCGGCGTTGCAGGGTGGTATCGACCGCGCCGCC          <  2:1070697/233‑1                                                                                                                                                                                                                                          GCCCAGTACTTTGCCGCCAACAAGCAGTGGAGCCCGCAATTGCAGGCGCTGACTGACGAAGCGTTGAAGGCTGACCCCAACGAGGTGACCAGCCTGGGCCTGCGCGGTATTGCTGCGTTTGAAGGCGAGCGTTATCAGGAAGCCATCGACTACTGGAAGCGTTTGCTGGCGCAGTTGCCAGAAGGTGATGCATCGCGAGCGGCGTTGCAGGGTGGTATCGACCGCGCCGCCGAGC      <  1:445067/235‑1                                                                                                                                                                                                                                             CAGTACTTTGCCGCCAACAAGCAGTGGAGCCCGCAATTGCAGGCGCTGACTGACGAAGCGTTGAAGGCTGACCCCAACGAGGTGACCAGCCTGGGCCTGCGCGGTATTGCTGCGTTTGAAGGCGAGCGTTATCAGGAAGCCATCGACTACTGGAAGCGTTTGCTGGCGCAGTTGCCAGAAGGTGATGCATCGCGAGCGGCGTTGCAGGGTGGTATCGACCGCGCCGCCGAGCGCCT  >  1:1091084/1‑236                                                                                                                                                                                                                                               GTACTTTGCCGCCAACAAGCAGTGGAGCCCGCAATTGCAGGCGCTGACTGACGAAGCGTTGAAGGCTGACCCCAACGAGGTGACCAGCCTGGGCCTGCGCGGTATTGCTGCGTTTGAAGGCGAGCGTTATCAGGAAGCCATCGCCTACT                                                                                       >  2:22062/1‑149                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACCTTGTCCTTCAAGGCAGCCGCCAGTTCCACCCGCACTTTCAGGCGAGCCGCCACAGGTGCAGGCTCGGTCGCCTCTGCTGGCACCCCACCCAGGCGCTCGGCGGCGCGGTCGATACCACCCTGCAACGCCGCTCGCGATGCATCACCTTCTGGCAACTGCGCCAGCAAACGCTTCCAGTAGTCGATGGCTTCCTGATAACGCTCGCCTTCAAACGCAGCAATACCGCGCAGGCCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/4910804‑4911042 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcccagTACTTTGCCGCCAACAAGCAGTGGAGCCCGCAATTGCAGGCGCTGACTGACGAAGCGTTGAAGGCTGACCCCAACGAGGTGACCAGCCTGGGCCTGCGCGGTATTGCTGCGTTTGAAGGCGAGCGTTATCAGGAAGCCATCGACTACTGGAAGCGTTTGCTGGCGCAGTTGCCAGAAGGTGATGCATCGCGAGCGGCGTTGCAGGGTGGTATCGACCGCGCCGCCGAGCGCCT  <  AE015451/4911129‑4910897

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.