New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AE015451 = 550991047 (0.760)11 (0.200) 11/304 NT 20.8% coding (109/1488 nt) urtB putative Urea ABC transporter
?AE015451 = 5509890 42 (0.770)coding (89/1488 nt) urtB putative Urea ABC transporter

ATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5509666‑5509910
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagcaggccggcctgctcgGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGAGTCTGAGCATGCGGGCAATCCTGGAAATCGGTGTTGGATTCTTCGCGGGTGAGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCCTTGTAGGAGCGGGTTCACCCGCGAATGGGCTGCAAAGCAGCCCCATGC  <  AE015451/5509890‑5509664
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
ATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAG                                                                                                                                                                                                                                                  >  1:137204/1‑232
       TGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCT                                                                                                                                                                                                                                       <  1:947899/236‑1
                                                       AGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGACTTCTTTCTCACCGCCAAGCCCGCCcg                                                                                                                                                                                                                                                      >  2:377507/1‑171
                                                                                                   CGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCC                                                                                                                                                                                                                                                        >  2:634181/1‑127
                                                                                                        AGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGGCGGGCTTG                                                                                                                                                                                                                            >  1:440917/1‑150
                                                                                                        AGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGGCGGGCTTG                                                                                                                                                                                                                            <  2:440916/150‑1
                                                                                                                         TCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTG                                                                                                                                                                                                                                         <  2:545916/120‑1
                                                                                                                                                        TCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAG                                                                                                                                                                                                                                                  >  2:294166/1‑80
                                                                                                                                                               CCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGGTTAGCAGGCGGAGGGTGAGCAGGAGTCTGAGCATGCGGGCAATCCgg                                                                                                                               >  1:768537/1‑186
                                                                                                                                                                 TGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGGCGGGCTTGGCc                                                                                                                                                                                                                         >  2:302014/1‑95
                                                                                                                                                                         acCCCCCGGGCACCCCCCGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTT                                                                                                                                                                                        <  1:181824/119‑1
                                                                                                                                                                             CCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACTGCCAAGCGCGCC                                                                                                                                                                                                                                                        >  2:1075452/1‑53
                                                                                                                                                                             CCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGGCTGGCTTGGCGGTGAGAGAGAATTCGCCCGCGCTGGCGTGGGTTGCCGGGGGGATTAGCAGCAGGAGGGT                                                                                                                                                              >  1:817679/1‑143
                                                                                                                                                                                 GGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGGCGGGCTTGGCGGCGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGAGTCGGAGCATGCGGGCAATCCgg                                                                                                                               >  1:721747/1‑168
                                                                                                                                                                                   CAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGAGTCTGAGCATGCGGGCAATCCTGGAAATCGGTGTTGGATTCTTCGCGGGTGAGCCCGCTCCTA                                                                                       >  1:979943/1‑208
                                                                                                                                                                                       CCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAG                                                                                                                                                                 <  1:1067406/130‑1
                                                                                                                                                                                                       GAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGAAGCAGGAGGGTGAGCAGGAGTCTGAGCATGCGGGCAATCCTGGAAATGGGTGTTGGATTCT                                                                                                            >  1:740795/1‑167
                                                                                                                                                                                                                  CACCGCCAGGCCCGCCGGGCCGCCCGGCCTGCTCGGCGGGCTTGGCGGTGAGAGAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGAGTCTGAGCATGC                                                                                                                                          <  1:1099905/126‑1
                                                                                                                                                                                                                                  GAGCAGGCCGGCCTGCTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGAGTCTGAGCATGCGGGCAATCCTGGAAATCGGTGTTGGATTCTTCGCGGGTGAGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCCTTGTAGGAGCGGGTTCACCCGCGAATGGGCTGCAAA              >  2:1085032/1‑234
                                                                                                                                                                                                                                     CAGGCCGGCCTGCTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGAGTCTGAGCATGCGGGCAATCCTGGA                                                                                                                             <  1:545917/120‑1
                                                                                                                                                                                                                                         CCGGCCTGCTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGAGTCTGAGCATGCGGGCAATCCTGGAAATCGGTGTTGGATTCTTCGCGGGTGAGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCCTTGTAGGAGCGGGTTCACCCGCGAATGGGCTGCAAA              <  2:678670/227‑1
                                                                                                                                                                                                                                                GCTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGGGAGCAGGAGTCTGAGCATGCGGGCAATCCTGGAAATCGGTGTTGGATTCTTCGCGGGTGAGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCCTTGT                                              >  1:377508/1‑188
                                                                                                                                                                                                                                                 CTCGGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGAGTCTGAGCATGCGGGCAATCCTGGAAATCGGTGTTGGATTCTTCGCGGGTGAGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCCTTGTAGGAGCGGGTTCACCCGCGAATGGGCTGCAAAGCAGCCCCATGC  <  2:984805/231‑1
                                                                                                                                                                                                                                                    GGCGGTCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGAGTCTGAGCATGCGGGCAATCCTGGAAATCGGTGTTGGATTCTTCGCGGGTGAGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCCTTGTAGGAGCGGGTTCACCCGCGAATGGG                     <  1:302015/209‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
ATGGGGCTGCTTTGCAGCCCATTCGCGGGTGAACCCGCTCCTACAAGGACCGCGCAGGTTTCAAACCTTGCACCGTCTCTGTGTAGGAGCGGGCTCACCCGCGAAGAATCCAACACCGATTTCCAGGATTGCCCGCATGCTCAGACTCCTGCTCACCCTCCTGCTGCTAATCCCCCTGGCAACCCACGCCAGCGAGGGCGAATTCTTTCTCACCGCCAAGCCCGCCGAGCAGGCCGGCCTGCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5509666‑5509910
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagcaggccggcctgctcgGCGGGCTTGGCGGTGAGAAAGAATTCGCCCTCGCTGGCGTGGGTTGCCAGGGGGATTAGCAGCAGGAGGGTGAGCAGGAGTCTGAGCATGCGGGCAATCCTGGAAATCGGTGTTGGATTCTTCGCGGGTGAGCCCGCTCCTACACAGAGACGGTGCAAGGTTTGAAACCTGCGCGGTCCTTGTAGGAGCGGGTTCACCCGCGAATGGGCTGCAAAGCAGCCCCATGC  <  AE015451/5509890‑5509664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.