New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5960132	67 (1.080)	5 (0.090)	5/316	NT	7.5%	coding (172/225 nt)	PP_5224	conserved protein of unknown function
	?	AE015451	= 5960118	62 (1.090)					coding (186/225 nt)	PP_5224	conserved protein of unknown function

GGGTGAGGATGAGGGAAGGCTTGGTGCTCATGATCCAGTCAGACTCCTTTGAACAGGCAGTTTTCAATGTGCAAATAAAGCAAAACCCCGCCCAAGGGCGGGGTTTGAGAAGGCTTTGGCGTCACCGACGCAGAACCCGACACTACCACAGCCGGGCAAATACTCAAGCCCCTGCGCTCAGTGTGCCTTAGCCTGCTCGCGCAAGACCTGGGCCTCGCGGCAGATCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5959902‑5960132 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcagatctgccgCGAGGCCCAGGTCTTGCGCGAGCAGGCTAAGGCACACTGAGCGCAGGGGCTTGAGTATTTGCCCGGCTGTGGTAGTGTCGGGTTCTGCGTCGGTGACGCCAAAGCCTTCTCAAACCCCGCCCTTGGGCGGGGTTTTGCTTTATTTGCACATTGAAAACTGCCTGTT  <  AE015451/5960118‑5959953                                                                                                                                                                                                                                                                                                                                                                                                               GGGTGAGGATGAGGGAAGGCTTGGTGCTCATGATCCAGTCAGACTCCTTTGAACAGGCAGTTTTCAATGTGCAAATAAAGCAAAACCCCGCCCAAGGGCGGGGTTTGAGAAGGCTTTGGCGTCACCGACGCAGAACCCGACACTACCCCAGCCGGGCAAATACTCAAGCCCCTGCGCTCAGTGTGCCTTAGCCTGCTCGCGCAAGACCTGTGCCTCGCGGCAGATCTGCC                                                                                                                                                                         >  1:6932/1‑230                                GATCCAGTCAGACTCCTTTGAACAGGCAGTTTTCAATGTGCAAATAAAGCAAAACCCCGCCCAAGGGCGGGGTTTGAGAAGGCTTTGGCGTCACCGACGCAGAACCCGACACTACCACAGCCGGGCAAATACTCAAGCCCCTGCGCTCAGTGTGCCTTAGCCTGCTCGCGCAAGACCTGGGCCTCGCGGCAGATCTGCCGCGAGGCCCAGGTCTTGCGCGAGCAGGCTAAGG                                                                                                                                        <  2:994021/232‑1                                                                       GCAAATAAAGCAAAACCCCGCCCAAGGGCGGGGTTGGAGAAGGCTTTGGCGTCACCGACGCAGAACCCGACACTACCACAGCCGGGCAAATACTCAAGCCCCTGCGCTCAGTGTGCCTTAGCCTGCTCGCGCAAGACCTGGGCCTCGCGGCAGATCTGCCGCGAGGCCCAGGTCTTGCGCGAGCAGGCTAAGGCACACTGAGCGCAGGGGCTTG                                                                                                                   <  1:981369/214‑1                                                                                                                                                          GGGCAAATGCTCAAGCCCCTGCGCTCAGTGTGCCTTAGCCTGCTCGCGCAAGTCCTGGGCCTCGCGGCAGATCTGCCGCGAGGCCCAGGTCTTGCGCGAGCAGGCTAAGGCAC                                                                                                                                     <  2:1057908/113‑1                                                                                                                                                             CAAATACTCAAGCCCCTGCGCTCAGTGTGCCTTAGCCTGCTCGCGCAAGACCTGGGCCTCGCGGCAGATCTGCCGCGAGGCCCAGGTCTTGCGCGAGCAGGCTAAGGCACACTGAGCGCAGGGGCTTGAGTATTTGCCCGGCTGGCGTAAGGTCGGGTTCTGCGTCGGTGACG                                                                      >  1:608123/1‑173                                                                                                                                                                                                   GCTCGCGCAAGACCTGGGCCTCGCGGCAGATCTGCCGCGAGGCCCAGGTCTTGCGCGAGCAGGCTAAGGCACACTGAGCGCAGGGGCTTGAGTATTTGCCCGGCTGTGGTAGTGTCGGGTTCTGCGTCGGTGACGCCAAAGCC                                                              >  2:476067/1‑143                                                                                                                                                                                                                          CGGCAGATCTGCCGCGAGGCCCAGGTCTTGCGCGAGCAGGCTAAGGCACACTGAGCGCAGGGGCTTGAGTATTTGCCCGGCTGTGGTAGTGTCGGGTTCTGCGTCGGTGACGCCAAAGCCTTCTCAAACCCCGCCCTTGGGCGGGGTTTTG                               <  1:982183/151‑1                                                                                                                                                                                                                          CGGCAGATCTGCCGCGAGGCCCAGGTCTTGCGCGAGCAGGCTAAGGCACACTGAGCGCAGGGGCTTGAGTATTTGCCCGGCTGTGGTAGTGTCGGGTTCTGCGTCGGTGACGCCAAAGCCTTCTCAAACCCCGCCCTTGGGCGGGGTTTTG                               >  2:982182/1‑151                                                                                                                                                                                                                                     CCGCGAGGCCCAGGTCTTGCGCGAGCAGGCTAAGGCACACTGAGCGCAGGGGCTTGAGTATTTGCCCGGCTGTGGTAGTGTCGGGTTCTGCGTCGGTGACGCCAAAGCCTTCTCAAACCCCGCCCTTGGGCGGGGTTTTGCTTTATTTGCACATTGAAAACTGCCTGTT  <  2:137450/169‑1                                                                                                                                                                                                                                                                                                                                                                                                               GGGTGAGGATGAGGGAAGGCTTGGTGCTCATGATCCAGTCAGACTCCTTTGAACAGGCAGTTTTCAATGTGCAAATAAAGCAAAACCCCGCCCAAGGGCGGGGTTTGAGAAGGCTTTGGCGTCACCGACGCAGAACCCGACACTACCACAGCCGGGCAAATACTCAAGCCCCTGCGCTCAGTGTGCCTTAGCCTGCTCGCGCAAGACCTGGGCCTCGCGGCAGATCTGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5959902‑5960132 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcagatctgccgCGAGGCCCAGGTCTTGCGCGAGCAGGCTAAGGCACACTGAGCGCAGGGGCTTGAGTATTTGCCCGGCTGTGGTAGTGTCGGGTTCTGCGTCGGTGACGCCAAAGCCTTCTCAAACCCCGCCCTTGGGCGGGGTTTTGCTTTATTTGCACATTGAAAACTGCCTGTT  <  AE015451/5960118‑5959953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.