New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AE015451 | 5964136 = | 71 (1.150) | 3 (0.050) | 3/322 | NT | 4.5% | coding (226/900 nt) | xerC | Tyrosine recombinase XerC |
? | AE015451 | 5964263 = | 61 (1.050) | coding (353/900 nt) | xerC | Tyrosine recombinase XerC | |||||
Rejected: Frequency below/above cutoff threshold. |
AGATCGAGGTTGGTCAGTTCCGATAGGCGTAGGCCCGAGGAATAGAACAGTTCGAGGATCGCCTGGTCACGCCGGGCGATGAAGTCGTCGTCGACGCCACCATCGAGCAGCTGCAGTGCGCGGTCGGTATCCAGTACCTTGGGCAGCCGCCGCTCACCTTTGGGCGCGCTCAGGCCGTTGGCCGGGTCGTGCTGGCACAGGCCTTCGCGGTTGAGGTAGCGGTACAGGCCGCGCACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/5964374‑5964136 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgcactgcAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGCCTGGTGCAGGTACTGGGCAAGGGTGGAAAAGCCCGCGTACTGCCGGTGGGTCGCAAGGCTCGCGAGGCGTTGCAGGCCTGGTACCGTTTGCGC > AE015451/5964263‑5964492 cGATCGAGGTTGGTCAGTTCCGATAGGCGTAGGCCCGAGGAATAGAACAGTTCGAGGATCGCCTGGTCACGCCGGGCGATGAAGTCGTCGTCGACGCCACCATCGAGCAGCTGCAGTGCGCGGTCGGTATCCAGTACCTTGGGCAGCCGCCGCTCACCTTTGGGCGCGCTCAGGCCGTTGGCCGGGTCGTGCTGGCACAGGCCTTCGCGGTTGAGGTAGCGGTACAGGCCGCGCAC < 2:505989/235‑1 CCGATAGGCGTAGGCCCGAGGAATAGAACAGTTCGAGGATCGCCTGGTCACGCCGGGCGATGAAGTCGTCGTCGACGCCACCATCGAGCAGCTGCAGTGCGCGGTCGGTATCCAGTACCTTGGGCAGCCGCCGCTCACCTTTGGGCGCGCTCAGGCCGTTGGCCGGGTCGTGCTGGCACAGGCCTTCGCGGTTGAGGTAGCGGTACAGGCCGC < 2:389235/213‑1 TCGTGCTGGCACAGGCCTTCGCGGTTGAGGTAGCGGTACAGGCCGCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGAT > 2:1134304/1‑169 TTCGCGGTTGAGGTAGCGGTACAGGCCGCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCA < 1:142419/85‑1 TTCGCGGTTGAGGTAGCGGTACAGGCCGCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCA > 2:142419/1‑85 CCGCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGCCTGGTGCAGGTACTGGGCAAGGGTGGAAAAGCCCGCGTACTGCCGGTGGGTCGCAAGGCTCGCGAGGCGTTGCAGGCCTGGTACCGTT > 1:650438/1‑236 CCGCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGCCTGGTGCAGGTACTGGGCAAGGGTGGAAAAGCCCGCGTACTGCCGGTGGGTCGCAAGGCTCGCGAGGCGTTGCAGGCCTGGTACCGTT > 1:813146/1‑236 CCGCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGCCTGGTGCAGGTACTGGGCAAG > 2:17008/1‑169 CCGCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGCCTGGTGCAGGTACTGGG > 2:1001875/1‑165 GCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGCCTGGTGCAGGTACTGGGCAAGGGTGGAAAAGCCCGCGTACTGCCGGTGGGTCGCATGGCTC > 1:277113/1‑207 GCGCACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGCCTGGTGCAGGTACTGGGCAAGGGCGG > 2:116551/1‑172 CACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGCACTGACCAACCTCGATCTTGATCACCT > 2:928341/1‑127 CACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGCCTGGTGCAGGTACTGGGCAAGGGTGGAAAAGCCCGCGTACTGCCGGTGGGTCGCAAGGCTCGCGAGGCGTTGCAGGCCTGGTACCGTTTGCGC > 1:162188/1‑236 CACTGCAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGCCTGGTGCAGGTACTGGGCAAGGGTGGAAAAGCCCGCGTACTGCCGGTGGGTCGCAAGGCCCGCGAGGCGTTGCAGGCCTGGTACCGTTTG > 2:394135/1‑233 CAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGCCTGG < 2:441274/142‑1 AGATCGAGGTTGGTCAGTTCCGATAGGCGTAGGCCCGAGGAATAGAACAGTTCGAGGATCGCCTGGTCACGCCGGGCGATGAAGTCGTCGTCGACGCCACCATCGAGCAGCTGCAGTGCGCGGTCGGTATCCAGTACCTTGGGCAGCCGCCGCTCACCTTTGGGCGCGCTCAGGCCGTTGGCCGGGTCGTGCTGGCACAGGCCTTCGCGGTTGAGGTAGCGGTACAGGCCGCGCACTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/5964374‑5964136 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgcactgcAGCTGCTCGATGGTGGCGTCGACGACGACTTCATCGCCCGGCGTGACCAGGCGATCCTCGAACTGTTCTATTCCTCGGGCCTACGCCTATCGGAACTGACCAACCTCGATCTTGATCACCTCGACCTCGCCGCCGGCCTGGTGCAGGTACTGGGCAAGGGTGGAAAAGCCCGCGTACTGCCGGTGGGTCGCAAGGCTCGCGAGGCGTTGCAGGCCTGGTACCGTTTGCGC > AE015451/5964263‑5964492 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |