New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5964760	59 (0.950)	3 (0.050)	3/328	NT	5.0%	coding (850/900 nt)	xerC	Tyrosine recombinase XerC
	?	AE015451	= 5964852	58 (0.980)					coding (46/696 nt)	had	putative (S)‑2‑haloacid dehalogenase
Rejected: Frequency below/above cutoff threshold.

AGGGCAATCGCATCAGCCCCCGGGCAGTGAGGCTGCGGGTAAAGGTTGCCGGTGAGCGTGAGCTGGGCCAACACCTGCACCCGCACATGCTTCGCCATTCCTTCGCCAGCCATGTGCTGGAATCATCCCAGGACCTGCGCGCGGTGCAGGAGATGCTCGGCCACGCCGACATCAGCACGACGCAAATCTACACCCACCTGGACTTCCAGCACCTGGCCGCGGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5964536‑5964760 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggtgtCCCACAGGGTATCGTCGAGGTCGAAGGTGATCAGCTTGATGCTCATGAGTCTGTGCCTTTGCTGCGTTTGGCCCGAGGGTGGGCGCTGTCGTACACCGCGGCCAGGTGCTGGAAGTCCAGGTGGGTGTAGATTTGCGTCGTGCTGATGTCGGCGTGGCCGAGCATCTCCTGCACCGCGCGCAGGTCCTGGGATGATTCCAGCACATGGCTGGCGAAGGAATGGCGAAG  <  AE015451/5964852‑5964625                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AGGGCAATCGCATCAGCCCCCGGGCAGTGAGGCTGCGGGTAAAGGTTGCCGGTGAGCGTGAGCTGGGCCAACACCTGCACCCGCACATGCTTCGCCATTCCTTCGCCAGCCATGTGCTGGAATCATCCCAGGACCTGCGCGCGGTGCAGGAGATGCTCGGCCACGCCGACATCAGCACGACGCAAATCTACACCCACGTGGACTTCCAGCACCTGGCCGCG                                                                                                                                                                                                                                          >  2:470950/1‑221                                                            GAGCTGGGCCAACACCTGCACCCGCACATGCTTCGCCATTCCTTCGCCAGCCATGTGCTGGAATCATCCCAGGACCTGCGCGCGGTGCAGGAGATGCTCGGCCACGCCGACATCAGCACGACGCAAATCTACACCCACCTGGACTTCCAGCACCTGGCCGCGGTGTCCCACAGGGTATCGTCGAGGTCGAAGGTGATCAGCTTGATGCTCATGAGTCTGTGCCTTTGCTGCGTTTG                                                                                                                                                                >  1:165667/1‑236                                                            GAGCTGGGCCAACACCTGCACCCGCACATGCTTCGCCATTCCTTCGCCAGCCATGTGCTGGAATCATCCCAGGACCTGCGCGCGGTGCAGGAGATGCTCGGCCACGCCGACATCAGCACGACGCAAATCTACACCCACCTGGACTTCCAGCACCTGGCCGCGG                                                                                                                                                                                                                                         >  2:214961/1‑163                                                                                            TCGCCATTCCTTCGCCAGCCATGTGCTGGAATCATCCCAGGACCTGCGCGCGGTGCAGGAGATGCTCGGCCACGCCGACATCAGCACGACGCAAATCTACACCCACCTGGACTTCCAGCACCTGGCCGCGGTGTCCCACAGGGTATCGTCGAGGTCGAAGGTGATCAGCTTGATGCTCATGAGTCTGTGCCTTTGCTGCGTTTGGCCCGAGGGTGG                                                                                                                                                    <  2:165667/216‑1                                                                                                                              TCCCAGGACCTGCGCGCGGTGCAGGAGATGCTCGGCCACGCCGACATCAGCACGACGCAAATCTACACCCACCTGGACTTCCAGCACCCGGCCGCcgcg                                                                                                                                                                                                                                       >  2:63511/1‑95                                                                                                                                CCAGGACCTGCGCGCGGTGCAGGAGATGCTCGGCCACGCCGACATCAGCACGACGCAAATCTACACCCACCTCGACTTCCAGCACCTTGCCGCCGTG                                                                                                                                                                                                                                       >  2:807144/1‑97                                                                                                                                        TGCGCGCGGTGCAGGAGATGCTCGGCCACGCCGACATCAGCACGGCGCAAAACTACACCCACCTGGACTTCCAGCACCTGGCCGCGGTGTCCCACAGGGTATCGTCGAGGTCGAAGGTGATCAGCTTGATGCTCATGAGTCTGTGCCTTTGCTGCGTTTGGCCCGAGGGTGGGCGCTGTCGTACACCGCGGCCAGGT                                                                                                                           <  1:116551/197‑1                                                                                                                                                                                                                          CGCGGTGTCCCACAGGGTATCGTCGAGGTCGAAGGTGATCAGCTTGATGCTCATGAGTCTGTGCCTTTGCTGCGTTTGGCCCGAGGGTGGGCGCTGTCGTACACCGCGGCCAGGTGCTGGAAGTCCAGGTGGGTGTAGATTTGCGTCGTGCTGATGTCGGCGTGGCCGAGCATCTCCTGCACCGCGCGCAGGTCCTGGGATGATTCCAGCACATGGCTGGCGAAGGAATGGCGAAG  >  1:345181/1‑236                                                                                                                                                                                                                          CGCGGTGTCCCACAGGGTATCGTCGAGGTCGAAGGTGATCAGCTTGATGCTCATGAGTCTGTGCCTTTGCTGCGTTTGGCCCGAGGGTGGGCGCTGTCGTACACCGCGGCCAGGTGCTGGAAGTCCAGGTGGGTGTAGATTTGCGTCGTGCTGATGTCGGCGTGGCCGAGCATCTCC                                                             >  1:570802/1‑177                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AGGGCAATCGCATCAGCCCCCGGGCAGTGAGGCTGCGGGTAAAGGTTGCCGGTGAGCGTGAGCTGGGCCAACACCTGCACCCGCACATGCTTCGCCATTCCTTCGCCAGCCATGTGCTGGAATCATCCCAGGACCTGCGCGCGGTGCAGGAGATGCTCGGCCACGCCGACATCAGCACGACGCAAATCTACACCCACCTGGACTTCCAGCACCTGGCCGCGGTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5964536‑5964760 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggtgtCCCACAGGGTATCGTCGAGGTCGAAGGTGATCAGCTTGATGCTCATGAGTCTGTGCCTTTGCTGCGTTTGGCCCGAGGGTGGGCGCTGTCGTACACCGCGGCCAGGTGCTGGAAGTCCAGGTGGGTGTAGATTTGCGTCGTGCTGATGTCGGCGTGGCCGAGCATCTCCTGCACCGCGCGCAGGTCCTGGGATGATTCCAGCACATGGCTGGCGAAGGAATGGCGAAG  <  AE015451/5964852‑5964625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.