New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 5988668	45 (0.730)	6 (0.100)	6/330	NT	12.7%	coding (1750/1788 nt)	kefB‑III	glutathione‑regulated potassium/H+ antiporter
	?	AE015451	= 5988758	39 (0.660)					intergenic (+52/‑494)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

TGGAAATGACCCGCCGGGCACTGGTGGGGTTGGGCCTGAGCGATGAACAGGCGGCGGACCGCATTGCACGGTTTACCCAGCATGACGAAGAGGTGCTGGAGGCCCAGGGGCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5988507‑5988668 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgggCGGCGCCCAATCTCACAGGCACTACAACCCTCAAGGCACGCGCCAAAAGGCCTCAGTCCGCATCCGAATCAAACAACCGCTCCAGCTCCACCCGCGCCTCCTTGGCCGTCTGCATCACCTTGGCCCGGTCATCACGCACTTGCCCCTGGGCCTCCAGCACCTCTTCGTCATGCTGGGTAAACCGTGCAATGCGGTCCGCCGCCTGTTCATCGCTCAGGCCCAACCCCACCA  <  AE015451/5988758‑5988528                                                                                                                                                                                                                                                                                                                                                                                                           TGGAAATGACCCGCCGGGCACTGGTGGGGTTGGGCCTGAGCGATGAACAGGCGGCGGACCGCATTGCACGGTTTACCCAGCATGACGAAGAGGTGCTGGAGGCCCAGGGGCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGCGGCGCCCAATCTCACAGGCACTACAACCCTCAAGGCACGCGCCAAAAGGCCTCAGTCCGCATCCGAATCAAAC                                                                                                                                                               <  1:1041204/236‑1                                                                                     ACGAAGAGGTGCTGGAGGCCCAGGGGCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGCGGCGCCCAATCTCACAGGCACTACAACCCTCACGGCACGCGCCAAAA                                                                                                                                                                                         >  2:582427/1‑126                                                                                         AGAGGTGCTGGAGGCCCAGGGGCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGCGGCGCCCAATCTCACAGGCACTACAACCCTCAAGGCACGCCCC                                                                                                                                                                                             >  1:134186/1‑118                                                                                                              GCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGCGGCGCCCAATCTCACAGGCACT                                                                                                                                                                                                                  >  1:539635/1‑76                                                                                                              GCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGGCGGCGCCCAATCTCACAGGCACT                                                                                                                                                                                                                  <  2:539634/76‑1                                                                                                                                        TGATGCAGACGGCCAAGGAGGCGCGGGCGGCGCCCAATCTCACAGGCACTACAACCCTCAAGGCACGCGCCAAAAGGCCTCAGTCCGCATCCGAATCAAACAACCGCTCCAGCTCCACCCGCGCCTCCTac                                                                                                                                 >  2:385886/1‑129                                                                                                                                                        GGAGGCGCGGGCGGCGCCCAATCTCACAGGCACTACAACCCTCAAGGCACGCGCCAAAAGGCCTCAGTCCGCATCCGAATCAAACAACCGCTCCAGCTCCACCCGCGCCTCCTTGGCCGTCTGCATCACCTTGGCCCGGTCATCACGCACTTGCCCCTGGGCCTCCAGCACCTCTTCGTCATGCTGGGTAAACCGTGCAATGCGGTCCGCCGCCTGTTCATCGC                    >  1:832759/1‑224                                                                                                                                                              GCGGGCGGCGCCCAATCTCACAGGCACTACAACCCTCAAGGCACGCGCCAAAAGGCCTCAGTCCGCATCCGAATCAAACAACCGCTCCAGCTCCACCCGCGCCTCCTTGGCCGGCTGCATCACCTTGGCCCGGTCATCACGCACTTGCCCCT                                                                                      >  2:46054/1‑152                                                                                                                                                               tgtGCGGCGCCCAATCTCACAGGCACTACAACCCTCAAGGCACGCGCCAAAAGGCCTCAGTCCGCATCCGAATCAAACAACCGCTCCAGCTCCACC                                                                                                                                             <  1:58400/93‑1                                                                                                                                                               CGGGCGGCGCCCAATCTCACAGGCACTACAACCCTCAAGGCACGCGCCAAAAGGCCTCAGTCCGCATCCGAATCAAACAACCGCTCCAGCTCCACCCGCGCCTCCTTGGCCGTCTGCATCACCTTGGCCCGGTCATCACGCACTTGCCCCTGGGCCTCCAGCACCTCTTCGTCATGCTGGGTAAACCGTGCAATGCGGTCCGCCGCCTGTTCATCGCTCAGGCCCAACCCCACCA  >  1:811048/1‑235                                                                                                                                                                                                                                                                                                                                                                                                           TGGAAATGACCCGCCGGGCACTGGTGGGGTTGGGCCTGAGCGATGAACAGGCGGCGGACCGCATTGCACGGTTTACCCAGCATGACGAAGAGGTGCTGGAGGCCCAGGGGCAAGTGCGTGATGACCGGGCCAAGGTGATGCAGACGGCCAAGGAGGCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/5988507‑5988668 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgggCGGCGCCCAATCTCACAGGCACTACAACCCTCAAGGCACGCGCCAAAAGGCCTCAGTCCGCATCCGAATCAAACAACCGCTCCAGCTCCACCCGCGCCTCCTTGGCCGTCTGCATCACCTTGGCCCGGTCATCACGCACTTGCCCCTGGGCCTCCAGCACCTCTTCGTCATGCTGGGTAAACCGTGCAATGCGGTCCGCCGCCTGTTCATCGCTCAGGCCCAACCCCACCA  <  AE015451/5988758‑5988528

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.