New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	= 6017051	60 (0.970)	6 (0.100)	6/328	NT	9.4%	coding (283/423 nt)	PP_5267	putative cytochrome c5
	?	AE015451	= 6017084	59 (1.000)					coding (250/423 nt)	PP_5267	putative cytochrome c5

GTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCCTTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/6016829‑6017051 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgcgCCTAAAATTGGTGACACCGCCGCGTGGAAAGAACGCGCCGACCACCAGGGCGGTCTGGATGGCATCCTGGCCAAGGCCATTACTGGTATCAACGCCATGCCGCCAAAGGGCACCTGTGCAGACTGCTCGGATGAAGACCTGAAAGGGGCGATCAAGAAAATGTCCGGGTTGTGATTTACAGCTGAATTGCATGAGGCCCGCCGTTGATGGCGGGCTTTGTTTTTGTGG  <  AE015451/6017084‑6016857                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCCTTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGG                                                                                                                                                                                                                                          >  1:859051/1‑219          GCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCCTTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGGTGCCATCCAGACCGCCCTGGTGGTCGGCGCG                                                                                                                                                                                                                                      >  2:412584/1‑214                                                                                                                                                           CGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGC                                                                                                                                                                                                                                         >  1:24568/1‑66                                                                                                                                                           CGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGC                                                                                                                                                                                                                                         <  2:24568/66‑1                                                                                                                                                                      TGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGCCTAAAATTGGTGACACCGCCGCGTGGAAAGAACGCGCCGACCACCAGGGCGGTCTGGATGGCATCCTGGCCAAGGCCATTACTGGTATCAACGCCATGCCGCCAAAGGGCACCTGTGCAGACT                                                                                                          >  1:387934/1‑182                                                                                                                                                                      TGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGCCTAAAATTGGTGACACCGCCGCGTGGAAAGAACGCGCCGACCACCAGGGCGGTCTGGATGGCATCCTGGCCAAGGCCATTACTGGTATCAACGCCATGCCGCCAAAGGGCACCTGTGCAGACT                                                                                                          <  2:387933/182‑1                                                                                                                                                                             AGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGCCTAAAATTGGTGACACCGCCGCGTGGAAAGAACGCGCCGACCACCAGGGCGGTCTGGATGGCATCTTGGCCAAGGCCAT                                                                                                                                                      >  1:7467/1‑131                                                                                                                                                                                          GCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCGCCTAAAATTGGTGACACCGCCGCGTGGAAAGAACGCGCCGACCACCAGGGCGGTCTGGATGGCATCCTGGCCAAGGCCATTACTGGTATCAACGCCATGCCGCCAAAGGGCACCTGTGCAGACTGCTCGGATGAAGACCT                                                                                          >  2:520761/1‑178                                                                                                                                                                                                         AGACCGCCCTGGTGGTCGGCGCGCCTAAAATTGGTGACACCGCCGCGTGGAAAGAACGCGCCGACCACCAGGGCGGTCTGGATGGCATCCTGGCCAAGGCCATTACTGGTATCAACGCCATGCCGCCAAAGGGCACCTGTGCAGACTGCTCGGATGAAGACCTGAAAGGGGCGATCAAGAAAATGTCCGGGTTGTGATTTACAGCTGAATTGCATGAGGCCCGCCGTTGATGGCGG                 >  1:779153/1‑236                                                                                                                                                                                                                CCTGGTGGTCGGCGCGCCTAAAATTGGTGACACCGCCGCGTGGAAAGAACGCGCCGACCACCAGGGCGGTCTGGATGGCATCCTGGCCAAGGCCATTACTGGTATCAACGCCATGCCGCCAAAGGGCACCTGTGCAGACTGCTCGGATGAAGACCTGAAAGGGGCGATCAAG                                                                          >  1:777210/1‑172                                                                                                                                                                                                                   GGTGGTCGGCGCGCCTAAAATTGGTGACACCGCCGCGTGGGAAGAACGCGCCGACCACCAGGGCGGGCTGGATGGCATCCTGGCCAAGGCCATTACTGGTATCAACGCCATGCCGCCAAAGGGCACCTGTGCAGACTGCTCGGATGAAGACCTGAAAGGGGCGATCAAGAAAATGTCt                                                                 >  2:1061437/1‑177                                                                                                                                                                                                                        TCGGCGCGCCTAAAATTGGTGACACCGCCGCGTGGAAAGAACGCGCCGACCACCAGGGCGGTCTGGATGGCATCCTGGCCAAGGCCATTACTGGTATCAACGCCATGCCGCCAAAGGGCACCTGTGCAGACTGCTCGGATGAAGACCTGAAAGGGGCGATCAAGAAAATGTCCGGGTTGTGATTTACAGCTGAATTGCATGAGGCCCGCCGTTGATGGCGGGCTTTGTTTTTGTGG  >  1:563201/1‑236                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCCTTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATCCAGACCGCCCTGGTGGTCGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AE015451/6016829‑6017051 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggcgcgCCTAAAATTGGTGACACCGCCGCGTGGAAAGAACGCGCCGACCACCAGGGCGGTCTGGATGGCATCCTGGCCAAGGCCATTACTGGTATCAACGCCATGCCGCCAAAGGGCACCTGTGCAGACTGCTCGGATGAAGACCTGAAAGGGGCGATCAAGAAAATGTCCGGGTTGTGATTTACAGCTGAATTGCATGAGGCCCGCCGTTGATGGCGGGCTTTGTTTTTGTGG  <  AE015451/6017084‑6016857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.